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Comment: Comment: BiomaRt: problems annotating a list of DEGs from DESeq2
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: How to import dataset from other software into DESeq2?
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Error with regionCounts()
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: Error with regionCounts()
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: How to get around the warning message: mzR has been built against a different Rc
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Scaling and normalization by deconvolution of SMART-Seq 2 data
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Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: ggplot and geom_lines for clustering
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: How to combine two DESeq2 objects (dds) for analysis
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: how can I do gene differential analysis on data after vst
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: limma with or without intercept gives different results
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: deseq2 normalization and statistical method
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: HISAT2 mapping
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Multifactorial Design for DESEQ2
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Doubt about expression data as well as assay
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: deseq2 normalization and statistical method
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Batch correction and Deseq2
2.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: Are polynomial contrasts for a time factor possible in DESeq2?
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: How to change the dot size in plotPCA?
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeqDataSetFromMatrix NA values
2.7 years ago ATpoint ★ 5.0k
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Answer: Answer: How to compute(calculate) rlog and vst provided from DESeq2
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Outlier removal outcome
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: deseq2 RLE normalization
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Using DESeq2 only for normalization
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: hill-shaped p-value distributions using EdgeR
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: different number of DEG because of outliers
updated 2.8 years ago by 43k • written 2.8 years ago by ★ 5.0k
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Answer: Answer: different number of DEG because of outliers
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: processing samples with significantly different counts
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq Normalization and miRNAs Filtering
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Does the running time of DESeq function is much more longer for design factor co
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Horizontal integration of two RNA-seq datasets derived from two different platfo
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Batch correction and Deseq2
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: SingleR and gcc-8.3.0
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Heatmap of two conditions from the normalized gene count data
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Which samples to remove from analysis based on Cook's distance outliers plot
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 for another layer of differential analysis
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Normalization of RNA seq data before DESeq2 and PCA in case of strong batch effe
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Batch question Bulk RNA-Seq
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Knee and Inflection of DropletUtils
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Subsetting DESeq when different cell types
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: PCA subset of genes vs DE
2.8 years ago ATpoint ★ 5.0k
1,100 results • Page 12 of 22
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