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Answer: Answer: Error EPICv2 ChAMP
3 days ago Yuan Tian ▴ 280
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1.5k
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Comment: Comment: Loading ChAMP IdatFiles with two different ArrayTypes
2.7 years ago Yuan Tian ▴ 280
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1
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1.5k
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Answer: Answer: Loading ChAMP IdatFiles with two different ArrayTypes
2.8 years ago Yuan Tian ▴ 280
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0
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742
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Are broad/narrow peak comparable?
Peaks MAC2 DiffBind
2.8 years ago Yuan Tian ▴ 280
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1
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1.8k
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DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq SICER2 DiffBind MACS2 offtopic
updated 2.9 years ago by 65k • written 2.9 years ago by ▴ 280
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1.0k
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Answer: Answer: How to save results of each step from ChAMP pipeline?
3.0 years ago Yuan Tian ▴ 280
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0
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870
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Answer: Answer: Error myDMP not found
3.2 years ago Yuan Tian ▴ 280
1
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1
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1.1k
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Answer: Answer: what is "sample_well" and "pool_ID" in ChAMP
3.4 years ago Yuan Tian ▴ 280
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1
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2.1k
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Comment: Comment: Why the LogFC and delta-beta value are different in ChAMP
3.4 years ago Yuan Tian ▴ 280
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2
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2.1k
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Answer: Answer: Why the LogFC and delta-beta value are different in ChAMP
3.4 years ago Yuan Tian ▴ 280
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1
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2.4k
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Answer: Answer: Blood cell composition adjustment in methylation EPIC array: ChAMP
3.4 years ago Yuan Tian ▴ 280
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0
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826
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Answer: Answer: champ.DMP finds different probes in A-vs-B and B-vs-A analysis
3.4 years ago Yuan Tian ▴ 280
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0
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793
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Answer: A: the function DMR in ChAMP package
3.9 years ago Yuan Tian ▴ 280
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0
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1.8k
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Comment: C: error with champ.load
4.0 years ago Yuan Tian ▴ 280
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1
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1.8k
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Comment: C: error with champ.load
4.0 years ago Yuan Tian ▴ 280
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1
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1.8k
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Comment: C: error with champ.load
4.0 years ago Yuan Tian ▴ 280
1
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0
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3.7k
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Comment: C: champ.runCombat is failing: "invalid 'row.names' length"
4.0 years ago Yuan Tian ▴ 280
1
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0
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3.7k
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Comment: C: champ.runCombat is failing: "invalid 'row.names' length"
4.0 years ago Yuan Tian ▴ 280
1
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1
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3.7k
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Comment: C: champ.runCombat is failing: "invalid 'row.names' length"
4.1 years ago Yuan Tian ▴ 280
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0
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2.7k
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Comment: C: Error in Champ for Bioconductor analyzing Methlayion array data
4.1 years ago Yuan Tian ▴ 280
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0
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2.5k
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Comment: C: Methylation EPIC array: ChAMP package-champ.load added probes?
4.1 years ago Yuan Tian ▴ 280
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1
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2.5k
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Comment: C: Methylation EPIC array: ChAMP package-champ.load added probes?
4.1 years ago Yuan Tian ▴ 280
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0
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809
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Answer: A: about the ChAMP package, the champ.norm output different results,when run it twi
4.2 years ago Yuan Tian ▴ 280
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1
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2.5k
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Comment: C: Methylation EPIC array: ChAMP package-champ.load added probes?
4.2 years ago Yuan Tian ▴ 280
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1
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2.5k
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Comment: C: Methylation EPIC array: ChAMP package-champ.load added probes?
4.2 years ago Yuan Tian ▴ 280
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1
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1.4k
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Comment: C: Skewed beta-distribution from Methylation EPIC array data
4.2 years ago Yuan Tian ▴ 280
1
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1
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2.5k
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Comment: C: Methylation EPIC array: ChAMP package-champ.load added probes?
4.3 years ago Yuan Tian ▴ 280
1
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1
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2.5k
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Answer: A: Methylation EPIC array: ChAMP package-champ.load added probes?
4.3 years ago Yuan Tian ▴ 280
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0
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1.6k
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Comment: C: Errors with champ.block
4.5 years ago Yuan Tian ▴ 280
1
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1
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1.1k
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Answer: A: ChAMP not handling 3+ levels in contrasts
4.6 years ago Yuan Tian ▴ 280
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0
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1.2k
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Answer: A: cpg.annotate model requirements
4.8 years ago Yuan Tian ▴ 280
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0
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2.1k
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Answer: A: Differential Methylation Analysis using ChAMP
4.8 years ago Yuan Tian ▴ 280
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0
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1.4k
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Comment: C: bumphunter stalls on "Smoothing coefficients"
4.9 years ago Yuan Tian ▴ 280
2
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2
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1.4k
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Answer: A: bumphunter stalls on "Smoothing coefficients"
4.9 years ago Yuan Tian ▴ 280
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0
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2.0k
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Answer: A: ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(b
5.0 years ago Yuan Tian ▴ 280
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0
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1.2k
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Answer: A: New to bioinformatics
5.0 years ago Yuan Tian ▴ 280
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0
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3.1k
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Comment: C: clarification about bumphunter value output
5.0 years ago Yuan Tian ▴ 280
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0
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811
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Answer: A: Loading packages in R minfi, limma
5.1 years ago Yuan Tian ▴ 280
1
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1
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1.9k
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Answer: A: Reading 450k data in minfi
5.2 years ago Yuan Tian ▴ 280
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1
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2.7k
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Comment: C: Error in Champ for Bioconductor analyzing Methlayion array data
5.2 years ago Yuan Tian ▴ 280
0
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1
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2.7k
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Comment: C: Error in Champ for Bioconductor analyzing Methlayion array data
5.2 years ago Yuan Tian ▴ 280
0
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0
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2.7k
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Comment: C: Error in Champ for Bioconductor analyzing Methlayion array data
5.2 years ago Yuan Tian ▴ 280
1
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1
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2.7k
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Answer: A: Error in Champ for Bioconductor analyzing Methlayion array data
5.3 years ago Yuan Tian ▴ 280
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0
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2.2k
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Comment: C: error while using champ.svd() function
5.4 years ago Yuan Tian ▴ 280
1
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1
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2.2k
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Comment: C: error while using champ.svd() function
5.4 years ago Yuan Tian ▴ 280
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1
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2.2k
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Comment: C: error while using champ.svd() function
5.4 years ago Yuan Tian ▴ 280
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0
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1.5k
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Comment: C: ChAMP Methylation analysis error code "could not find function champ.load"
5.4 years ago Yuan Tian ▴ 280
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1
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1.5k
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Comment: C: ChAMP Methylation analysis error code "could not find function champ.load"
5.4 years ago Yuan Tian ▴ 280
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0
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1.3k
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Answer: A: EPIC methylation array - analysis with ChAMP - how to export bed/wig file to vie
5.4 years ago Yuan Tian ▴ 280
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1
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976
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Comment: C: How can I define which samples are controls and which samples are cases in ChAMP
5.5 years ago Yuan Tian ▴ 280
79 results • Page 1 of 2
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