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bedbaser offtopic

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

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ChIPSeq SICER2 DiffBind MACS2 offtopic

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by Yuan Tian ▴ 290

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Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

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Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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