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1
vote
2
replies
817
views
Too many DEGs
deseq2
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 20
0
votes
0
replies
8.5k
views
Comment: C: DESeq2 GLM modelling and Wald's test
6.6 years ago Raymond ▴ 20
3
votes
3
replies
1.7k
views
How to decide whether a variate should be in the model or not
deseq2 rnaseq
updated 2.9 years ago by 43k • written 7.2 years ago by ▴ 20
0
votes
0
replies
906
views
Comment: C: Any way to get a p-value for multiple comparisons in DESeq2?
7.2 years ago Raymond ▴ 20
1
vote
2
replies
906
views
Any way to get a p-value for multiple comparisons in DESeq2?
deseq2
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 20
0
votes
0
replies
1.3k
views
Comment: C: Any difference between v$E and cpm(keep,log=TRUE)
7.2 years ago Raymond ▴ 20
0
votes
2
replies
1.3k
views
Any difference between v$E and cpm(keep,log=TRUE)
limma
updated 7.2 years ago by 53k • written 7.2 years ago by ▴ 20
0
votes
0
replies
3.0k
views
Comment: C: PCA plot of variance stabilized transformation of normalized counts in limma
7.2 years ago Raymond ▴ 20
0
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1
reply
3.0k
views
Comment: C: PCA plot of variance stabilized transformation of normalized counts in limma
7.3 years ago Raymond ▴ 20
0
votes
4
replies
3.0k
views
PCA plot of variance stabilized transformation of normalized counts in limma
limma-voom deseq2 EdgeR
updated 7.3 years ago by ★ 13k • written 7.3 years ago by ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: DESeq2 got stuck for one night, restarting?
7.3 years ago Raymond ▴ 20
0
votes
2
replies
1.8k
views
DESeq2 got stuck for one night, restarting?
deseq2 rnaseq
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 20
0
votes
1
reply
4.2k
views
Comment: C: Simultaneously adding two different covariates in the model gives error in DESeq
7.3 years ago Raymond ▴ 20
0
votes
1
reply
755
views
DESeq2 with too many rejections
deseq2
updated 7.5 years ago by 43k • written 7.5 years ago by ▴ 20
0
votes
3
replies
1.5k
views
Analyzing a subgroups of samples, which result should I trust
deseq2 rna-seq
written 7.7 years ago by ▴ 20
0
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0
replies
1.0k
views
Comment: C: Re-calculate DESeq from dds based on another design
7.9 years ago Raymond ▴ 20
0
votes
2
replies
1.0k
views
Re-calculate DESeq from dds based on another design
deseq2
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 20
1
vote
5
replies
2.4k
views
To analyze the overall variance, which one to choose, vst or DESeq2 normalized counts?
deseq2
updated 7.9 years ago by ▴ 20 • written 7.9 years ago by ▴ 20
0
votes
0
replies
2.4k
views
Comment: C: To analyze the overall variance, which one to choose, vst or DESeq2 normalized c
7.9 years ago Raymond ▴ 20
0
votes
0
replies
4.3k
views
Comment: C: How to get the latest KEGG pathway
7.9 years ago Raymond ▴ 20
1
vote
2
replies
4.3k
views
How to get the latest KEGG pathway
KEGG kegg.db kegggraph
7.9 years ago Raymond ▴ 20
1
vote
1
reply
1.7k
views
Comment: C: what the first row without a gene name?
8.0 years ago Raymond ▴ 20
4
votes
4
replies
1.7k
views
what the first row without a gene name?
deseq2
updated 4.9 years ago by 68k • written 8.0 years ago by ▴ 20
0
votes
0
replies
7.0k
views
Comment: C: Remove one sample from DESeq2 subject
8.0 years ago Raymond ▴ 20
3
votes
2
replies
7.0k
views
Remove one sample from DESeq2 subject
deseq2
updated 8.0 years ago by 43k • written 8.0 years ago by ▴ 20
0
votes
0
replies
3.2k
views
Comment: C: PCA based on a subset of genes
8.2 years ago Raymond ▴ 20
0
votes
0
replies
3.2k
views
Comment: C: PCA based on a subset of genes
8.2 years ago Raymond ▴ 20
3
votes
7
replies
3.2k
views
PCA based on a subset of genes
deseq2
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 20
0
votes
1
reply
3.2k
views
Comment: A: PCA based on a subset of genes
8.2 years ago Raymond ▴ 20
0
votes
0
replies
5.6k
views
Comment: C: How to get DESeq2 sizefactors from data imported using tximport
8.2 years ago Raymond ▴ 20
0
votes
1
reply
5.6k
views
Comment: C: How to get DESeq2 sizefactors from data imported using tximport
8.2 years ago Raymond ▴ 20
31 results • Page 1 of 1
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