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Showing :
kegggraph
•
reset
0
votes
0
replies
132
views
Gene names not included on KEGGgraph plots
KEGGgraph
3 months ago
hilarius_bookbinder
• 0
0
votes
1
reply
291
views
KEGGgraph parseKGML2Graph function
KEGGgraph
updated 10 months ago by
James W. MacDonald
63k • written 10 months ago by
Cathy
• 0
4
votes
2
replies
813
views
Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
11 months ago
Wuschel
▴ 10
4
votes
6
replies
2.4k
views
Pathview unable to download pathways
clusterProfiler
KEGGgraph
clusterpr
KEGG
pathview
updated 12 months ago by
Guido Hooiveld
★ 3.7k • written 15 months ago by
rama
▴ 10
0
votes
3
replies
682
views
ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST
ROntoTools
KEGG
KEGGgraph
13 months ago
abf
▴ 30
0
votes
1
reply
533
views
Pathview error Warning: Parsing ./mmu04928.xml file failed, please check the file!
KEGGgraph
pathview
updated 15 months ago by
Guido Hooiveld
★ 3.7k • written 15 months ago by
k.jane.olczak
• 0
1
vote
2
replies
895
views
cannot find function even though KEGGgraph package supposedly installed
kegggraph
biocinstaller
updated 5.2 years ago by
Mike Smith
★ 6.1k • written 5.2 years ago by
kathleenfix
▴ 10
1
vote
2
replies
1.4k
views
How to get the latest KEGG pathway
KEGG
kegg.db
kegggraph
5.6 years ago
Raymond
▴ 20
1
vote
2
replies
973
views
possible bug in parseKGML?
kegggraph
6.1 years ago
Martin Pirkl
• 0
2
votes
11
replies
3.9k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
6.2 years ago
Luo Weijun
★ 1.6k
0
votes
2
replies
822
views
incorrect direction in compound-gene interactions
kegggraph
6.2 years ago
AR3513
• 0
0
votes
6
replies
3.0k
views
KEGGgraph warning: "In structure(x$children, class = "XMLNodeList") :"
kegggraph
6.3 years ago
AR3513
• 0
0
votes
1
reply
756
views
objNameToList() on some particular list of objects in parent frame
tkWidgets
xml
kegggraph
updated 6.4 years ago by
James W. MacDonald
63k • written 6.4 years ago by
urwaCFC
• 0
2
votes
3
replies
2.9k
views
How to convert graphNEL object into Adjacency Matrix?
graph
kegggraph
xml
updated 6.4 years ago by
Robert Castelo
★ 3.0k • written 6.4 years ago by
urwaCFC
• 0
0
votes
5
replies
2.6k
views
retrieve human readable gene names from KEGG identifiers
kegggraph
7.6 years ago
Osvaldo
▴ 40
0
votes
7
replies
1.8k
views
Using KeggGraph's KEGGpathway2reactionGraph and mergeKEGGgraphs functions
graph
KEGGgraph
graph
KEGGgraph
10.0 years ago • updated 9.9 years ago
Zhang, Jitao David
▴ 120
1
vote
5
replies
1.7k
views
About the state of KEGG-related packages
KEGGSOAP
KEGGgraph
keggorthology
clusterProfiler
KEGGprofile
PathNet
KEGGSOAP
KEGGgraph
updated 10.2 years ago by
Luo Weijun
★ 1.6k • written 10.2 years ago by
enricoferrero
▴ 660
0
votes
0
replies
932
views
looking for tools to study additive expression effects in gene pathways/networks
Pathways
Rgraphviz
KEGGgraph
Pathways
Rgraphviz
KEGGgraph
10.4 years ago
Christopher T Gregg
▴ 210
0
votes
2
replies
1.7k
views
KEGGgraph problem
KEGGgraph
KEGGgraph
updated 10.7 years ago by
Zhang, Jitao David
▴ 120 • written 10.7 years ago by
Guest User
★ 12k
0
votes
4
replies
1.6k
views
KEGGgraph
Pathways
Organism
graph
PROcess
KEGGgraph
Pathways
Organism
graph
PROcess
KEGGgraph
10.9 years ago
Ricardo Silva
▴ 110
0
votes
2
replies
1.1k
views
KEGGgraph
graph
KEGGgraph
graph
KEGGgraph
updated 12.2 years ago by
Jitao David Zhang
▴ 340 • written 12.2 years ago by
Jing Huang
▴ 380
0
votes
3
replies
1.6k
views
Fwd: KEGGgraph / Rgraphviz dot layout
KEGGgraph
KEGGgraph
updated 12.8 years ago by
Jitao David Zhang
▴ 340 • written 12.8 years ago by
Unger, Kristian
▴ 40
0
votes
2
replies
1.1k
views
(no subject)
KEGGgraph
KEGGgraph
updated 12.8 years ago by
Jitao David Zhang
▴ 340 • written 12.8 years ago by
Yan Jiao
▴ 140
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 93, Issue 26: How to create KEGG's pathway data for SPIA?
Organism
KEGGgraph
SPIA
Organism
KEGGgraph
SPIA
12.8 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.0k
views
KEGGgraph and Rgraphviz for win 64
KEGGgraph
KEGGgraph
12.8 years ago
Yan Jiao
▴ 140
0
votes
1
reply
1.1k
views
About KEGGgraph supplementary information
Rgraphviz
KEGGgraph
Rgraphviz
KEGGgraph
updated 12.9 years ago by
Uzun, Alper
▴ 10 • written 12.9 years ago by
Jitao Zhang
▴ 20
0
votes
0
replies
1.0k
views
error in plotKEGGGraph
Pathways
GLAD
KEGGgraph
Pathways
GLAD
KEGGgraph
13.0 years ago
Robert M. Flight
▴ 280
0
votes
3
replies
1.2k
views
error in plotKEGGGraph
Pathways
KEGGgraph
Pathways
KEGGgraph
updated 13.0 years ago by
Pierre Neuvial
▴ 30 • written 13.0 years ago by
Jitao David Zhang
▴ 340
0
votes
1
reply
932
views
error in plotKEGGGraph
Pathways
KEGGgraph
Pathways
KEGGgraph
updated 13.2 years ago by
Jitao David Zhang
▴ 340 • written 13.2 years ago by
Robert M. Flight
▴ 280
0
votes
2
replies
1.4k
views
makeAttr() missing in KEGGgraph
KEGGgraph
KEGGgraph
updated 13.3 years ago by
Martin Morgan
25k • written 13.3 years ago by
Groot, Philip de
▴ 630
0
votes
1
reply
1.6k
views
KEGGgraph: retrieveKGML error (due to wrong ftp path)
KEGGgraph
KEGGgraph
updated 13.5 years ago by
Cristobal Fresno Rodríguez
▴ 370 • written 13.5 years ago by
Ludwig Geistlinger
▴ 50
0
votes
4
replies
1.4k
views
KEGGgraph fails on a KEGG XML file
KEGGgraph
KEGGgraph
updated 13.6 years ago by
Jitao David Zhang
▴ 340 • written 13.6 years ago by
Rajarshi Guha
▴ 120
0
votes
2
replies
1.3k
views
KEGGgraph: any way to obtain 'outcome' nodes?
Pathways
KEGGgraph
Pathways
KEGGgraph
updated 13.8 years ago by
Fraser Sim
▴ 270 • written 13.8 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.3k
views
KEGGgraph bug
Pathways
Organism
SIM
KEGGgraph
Pathways
Organism
SIM
KEGGgraph
updated 13.8 years ago by
Marc Carlson
★ 7.2k • written 13.8 years ago by
Fraser Sim
▴ 270
0
votes
1
reply
852
views
KEGGgraph query
Pathways
graph
KEGGgraph
Pathways
graph
KEGGgraph
updated 13.8 years ago by
Jitao David Zhang
▴ 340 • written 13.8 years ago by
anupam sinha
▴ 270
0
votes
1
reply
1.2k
views
KEGGgraph bug
Organism
KEGGgraph
Organism
KEGGgraph
updated 13.8 years ago by
Jitao David Zhang
▴ 340 • written 13.9 years ago by
Fraser Sim
▴ 270
0
votes
3
replies
1.4k
views
Problem with KEGGgraph
Organism
hgu133plus2
KEGGgraph
Organism
hgu133plus2
KEGGgraph
updated 14.0 years ago by
Tony Chiang
▴ 570 • written 14.0 years ago by
Fraser Sim
▴ 270
0
votes
0
replies
713
views
Important KEGGgraph update (parse issue solved)
KEGGgraph
KEGGgraph
14.3 years ago
Jitao David Zhang
▴ 340
0
votes
3
replies
1.7k
views
KEGGgraph: gene ids for nodes in a pathway
KEGGgraph
KEGGgraph
updated 14.4 years ago by
Jitao David Zhang
▴ 340 • written 14.4 years ago by
Tim Smith
★ 1.1k
0
votes
4
replies
1.2k
views
KEGGGraph: some complexed proteins are orphans in graphNEL
KEGGgraph
KEGGgraph
updated 14.4 years ago by
Jitao David Zhang
▴ 340 • written 14.4 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.0k
views
KEGGgraph package: KGML files working again
KEGGgraph
KEGGgraph
updated 14.4 years ago by
Markus Schmidberger
▴ 380 • written 14.4 years ago by
Jitao David Zhang
▴ 340
0
votes
7
replies
2.7k
views
Visualise KEGG pathway and highlight genes
Cancer
KEGGgraph
Cancer
KEGGgraph
updated 14.4 years ago by
Paolo Sonego
▴ 140 • written 14.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.3k
views
KEGGgraph, error
Organism
hgu133a
KEGGgraph
Organism
hgu133a
KEGGgraph
updated 14.4 years ago by
Jitao Zhang
▴ 20 • written 14.4 years ago by
Markus Schmidberger
▴ 380
0
votes
1
reply
924
views
KEGGgraph question
Pathways
KEGGgraph
Pathways
KEGGgraph
14.6 years ago • updated 14.5 years ago
Sim, Fraser
▴ 350
0
votes
0
replies
749
views
KEGGgraph ??
Pathways
GO
GOstats
keggorth
KEGGgraph
Pathways
GO
GOstats
keggorth
KEGGgraph
15.0 years ago
Paul Evans
▴ 180
45 results • Page
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Replies
Comment: LIMMA dupcor() function time issue.
by
Gordon Smyth
48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb
by
robynne.braun
• 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
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16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
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The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
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Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
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