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Assess fit of variance prior
limma
updated 13 months ago by 52k • written 13 months ago by ▴ 30
0
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1
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2.7k
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Comment: Comment: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
2.6 years ago Frederik Ziebell ▴ 30
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0
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1.1k
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Comment: Comment: running apeglm on a normal model and multiple coefficients
2.7 years ago Frederik Ziebell ▴ 30
1
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2
replies
1.1k
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running apeglm on a normal model and multiple coefficients
shrinkage apeglm
2.7 years ago Frederik Ziebell ▴ 30
0
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1
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1.0k
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Wrong stdev.unscaled from contrasts.fit when lmFit contains a weights matrix
limma
updated 3.4 years ago by 52k • written 3.4 years ago by ▴ 30
0
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1
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890
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Comment: C: fitFDist() shows poor fit if df1=1
4.3 years ago Frederik Ziebell ▴ 30
1
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3
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890
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fitFDist() shows poor fit if df1=1
limma
updated 4.3 years ago by 52k • written 4.3 years ago by ▴ 30
1
vote
1
reply
1.6k
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Using RUVs with known batches
ruvseq deseq2
updated 5.4 years ago by 43k • written 5.4 years ago by ▴ 30
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1
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1.2k
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Comment: C: lmFit very slow if there are missing values
5.4 years ago Frederik Ziebell ▴ 30
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3
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1.2k
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lmFit very slow if there are missing values
limma
updated 5.4 years ago by 52k • written 5.4 years ago by ▴ 30
0
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2
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6.6k
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Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.7 years ago Frederik Ziebell ▴ 30
0
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1
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6.6k
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Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.7 years ago Frederik Ziebell ▴ 30
0
votes
1
reply
6.6k
views
Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.7 years ago Frederik Ziebell ▴ 30
0
votes
1
reply
6.6k
views
Comment: C: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.7 years ago Frederik Ziebell ▴ 30
0
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1
reply
6.6k
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Comment: A: DESeq2: Poor dispersion fit, even when a local or custom fit is used
6.7 years ago Frederik Ziebell ▴ 30
0
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13
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6.6k
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DESeq2: Poor dispersion fit, even when a local or custom fit is used
deseq2 dispersion
6.7 years ago Frederik Ziebell ▴ 30
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4
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2.3k
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rlog transformation producing outliers with very high log-transformed counts
deseq2 rlog
7.0 years ago Frederik Ziebell ▴ 30
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2
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2.3k
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Comment: A: rlog transformation producing outliers with very high log-transformed counts
7.0 years ago Frederik Ziebell ▴ 30
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0
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1.3k
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Answer: A: Combine multiple sashimis stretching over the same intron
7.0 years ago Frederik Ziebell ▴ 30
1
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2
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1.3k
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Combine multiple sashimis stretching over the same intron
gviz sashimi plots
7.1 years ago • updated 7.0 years ago Frederik Ziebell ▴ 30
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