Showing : shrinkage • reset
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DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage DESeq2 contrast
updated 21 days ago by ★ 5.0k • written 25 days ago by • 0
1
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3
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1.3k
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DESeq differential expression results are too stringet. How to relax my criteria
shrinkage DifferentialExpression DESeq2
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by ▴ 10
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2
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1.6k
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running apeglm on a normal model and multiple coefficients
shrinkage apeglm
3.8 years ago Frederik Ziebell ▴ 30
2
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8
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3.6k
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DESeq2 : log2FC discrepencies between results and lfcShrink
deseq2 shrinkage
updated 3.2 years ago by 43k • written 6.0 years ago by ▴ 20
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2
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1.7k
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DESeq2: qualitatively different results between deseq2 v1.14 and deseq2 v1.22 when run with shrinkage
deseq2 shrinkage
updated 7.1 years ago by 43k • written 7.1 years ago by • 0
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8
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5.3k
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DESeq2: betaPrior changes significance dramatically
deseq2 betaPrior shrinkage significance
7.8 years ago brynedal ▴ 40
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3
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1.9k
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disagreement between log2FoldChange and lfcMLE in DESeq2
deseq2 log2fc shrinkage
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 90
7 results • Page 1 of 1
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Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course by a2a2haa • 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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