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Comment: how to remove batch effects of RNA seq data based on continuous variables(like s
19 months ago
amnahsiddiqa
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Comment: PCA for QC should include subset of top variable genes or full set of genes in R
19 months ago
amnahsiddiqa
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how to remove batch effects of RNA seq data based on continuous variables(like surrogate variables from sva package) using combatseq or limma (removeā¦
combatseq
RNASeqData
sva
limma
19 months ago
amnahsiddiqa
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2
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PCA for QC should include subset of top variable genes or full set of genes in RNAseq data?
BatchQC
RNASeqData
sva
BatchEffect
updated 19 months ago by
ATpoint
★ 4.6k • written 19 months ago by
amnahsiddiqa
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How to go for Batch correction in RNA-seq expeiment conducted based on imbalanced Experimental design ?
RNASeqData
BatchEffect
sva
19 months ago
amnahsiddiqa
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851
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DESEQ2 differential expression for subsets of data?
RNASeqData
DESeq2
updated 19 months ago by
ATpoint
★ 4.6k • written 19 months ago by
amnahsiddiqa
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Comment:
C: Determining Mismatch (MM) and perfect match (PM) chip design
6.6 years ago
amnahsiddiqa
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Determining Mismatch (MM) and perfect match (PM) chip design
affymetrix microarrays
updated 6.6 years ago by
James W. MacDonald
68k • written 6.6 years ago by
amnahsiddiqa
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4
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WGCNA grey module
WGCNA
updated 22 months ago by
Abir.khazaal
▴ 10 • written 6.7 years ago by
amnahsiddiqa
▴ 10
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750
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WGCNA , value of nPermutations, module preservation
wgcna
6.7 years ago
amnahsiddiqa
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803
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WGCNA module trait relationship
WGCNA
wgcna
6.7 years ago
amnahsiddiqa
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Comment:
C: WGCNA grey module
6.7 years ago
amnahsiddiqa
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