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7
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3
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6.4k
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VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
r limma voom vsn
updated 3.2 years ago by 53k • written 6.9 years ago by ▴ 70
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6.4k
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Comment: C: VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
6.9 years ago Sebastian Hesse ▴ 70
0
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1
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2.8k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
updated 6.9 years ago by 53k • written 6.9 years ago by ▴ 70
0
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0
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2.8k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
6.9 years ago Sebastian Hesse ▴ 70
0
votes
2
replies
2.8k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
6.9 years ago Sebastian Hesse ▴ 70
0
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6
replies
2.8k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma eBayes
updated 6.9 years ago by 53k • written 6.9 years ago by ▴ 70
1
vote
0
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1.6k
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ClusterProfiler: what to show as dot size (GeneRatio vs Count)
clusterProfiler
7.0 years ago Sebastian Hesse ▴ 70
2
votes
1
reply
3.3k
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Selection of terms in clusterProfiler, the inverse of dropGO
clusterProfiler r
7.0 years ago Sebastian Hesse ▴ 70
2
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0
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3.3k
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Answer: A: Selection of terms in clusterProfiler, the inverse of dropGO
7.0 years ago Sebastian Hesse ▴ 70
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0
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1.6k
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Comment: C: Define batch effect variables before removing them or getting rid of hidden surr
7.2 years ago Sebastian Hesse ▴ 70
0
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0
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1.2k
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Interpretation of PVCA result and what to correct for
pvca batch effect batch effect correction
7.2 years ago Sebastian Hesse ▴ 70
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0
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8.1k
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Comment: C: ComBat with multiple batches
7.2 years ago Sebastian Hesse ▴ 70
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0
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3.1k
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Comment: C: Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactl
7.2 years ago Sebastian Hesse ▴ 70
1
vote
1
reply
1.6k
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Define batch effect variables before removing them or getting rid of hidden surrogate variables
batch effect correction sva proteomics
7.2 years ago Sebastian Hesse ▴ 70
0
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0
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5.8k
views
Comment: C: sva: how to incorporate adjusting variables
7.2 years ago Sebastian Hesse ▴ 70
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