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7
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VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
r limma voom vsn
updated 2.0 years ago by 51k • written 5.7 years ago by ▴ 70
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5.0k
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Comment: C: VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
5.7 years ago Sebastian Hesse ▴ 70
0
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1
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2.2k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
updated 5.7 years ago by 51k • written 5.7 years ago by ▴ 70
0
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0
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2.2k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
5.7 years ago Sebastian Hesse ▴ 70
0
votes
2
replies
2.2k
views
Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
5.7 years ago Sebastian Hesse ▴ 70
0
votes
6
replies
2.2k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma eBayes
updated 5.7 years ago by 51k • written 5.7 years ago by ▴ 70
1
vote
0
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1.1k
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ClusterProfiler: what to show as dot size (GeneRatio vs Count)
clusterProfiler
5.8 years ago Sebastian Hesse ▴ 70
2
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0
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2.8k
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Answer: A: Selection of terms in clusterProfiler, the inverse of dropGO
5.8 years ago Sebastian Hesse ▴ 70
2
votes
1
reply
2.8k
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Selection of terms in clusterProfiler, the inverse of dropGO
clusterProfiler r
5.8 years ago Sebastian Hesse ▴ 70
0
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0
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1.2k
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Comment: C: Define batch effect variables before removing them or getting rid of hidden surr
6.0 years ago Sebastian Hesse ▴ 70
0
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0
replies
887
views
Interpretation of PVCA result and what to correct for
pvca batch effect batch effect correction
6.0 years ago Sebastian Hesse ▴ 70
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0
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6.7k
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Comment: C: ComBat with multiple batches
6.0 years ago Sebastian Hesse ▴ 70
0
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0
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2.6k
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Comment: C: Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactl
6.0 years ago Sebastian Hesse ▴ 70
1
vote
1
reply
1.2k
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Define batch effect variables before removing them or getting rid of hidden surrogate variables
batch effect correction sva proteomics
6.0 years ago Sebastian Hesse ▴ 70
0
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0
replies
5.3k
views
Comment: C: sva: how to incorporate adjusting variables
6.0 years ago Sebastian Hesse ▴ 70
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