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7
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VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
r limma voom vsn
updated 2.9 years ago by 53k • written 6.7 years ago by ▴ 70
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6.0k
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Comment: C: VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
6.7 years ago Sebastian Hesse ▴ 70
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1
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2.7k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 70
0
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0
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2.7k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
6.7 years ago Sebastian Hesse ▴ 70
0
votes
2
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2.7k
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Comment: C: eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate
6.7 years ago Sebastian Hesse ▴ 70
0
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6
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2.7k
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eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma eBayes
updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 70
1
vote
0
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1.4k
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ClusterProfiler: what to show as dot size (GeneRatio vs Count)
clusterProfiler
6.7 years ago Sebastian Hesse ▴ 70
2
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1
reply
3.2k
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Selection of terms in clusterProfiler, the inverse of dropGO
clusterProfiler r
6.7 years ago Sebastian Hesse ▴ 70
2
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0
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3.2k
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Answer: A: Selection of terms in clusterProfiler, the inverse of dropGO
6.7 years ago Sebastian Hesse ▴ 70
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0
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1.5k
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Comment: C: Define batch effect variables before removing them or getting rid of hidden surr
6.9 years ago Sebastian Hesse ▴ 70
0
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0
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1.1k
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Interpretation of PVCA result and what to correct for
pvca batch effect batch effect correction
6.9 years ago Sebastian Hesse ▴ 70
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0
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7.8k
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Comment: C: ComBat with multiple batches
6.9 years ago Sebastian Hesse ▴ 70
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0
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2.9k
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Comment: C: Error in solve.default(t(mod) %*% mod) : Lapack routine dgesv: system is exactl
6.9 years ago Sebastian Hesse ▴ 70
1
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1
reply
1.5k
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Define batch effect variables before removing them or getting rid of hidden surrogate variables
batch effect correction sva proteomics
6.9 years ago Sebastian Hesse ▴ 70
0
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0
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5.7k
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Comment: C: sva: how to incorporate adjusting variables
6.9 years ago Sebastian Hesse ▴ 70
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