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eBayes
•
reset
6
votes
4
replies
729
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
23 months ago
snijesh
▴ 20
0
votes
5
replies
591
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 2.9 years ago by
Gordon Smyth
47k • written 2.9 years ago by
irene.roman
• 0
0
votes
6
replies
831
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 3.9 years ago by
Gordon Smyth
47k • written 3.9 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
878
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 4.3 years ago by
Gordon Smyth
47k • written 4.3 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
1.0k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
4.9 years ago
darthratus
• 0
1
vote
2
replies
1.0k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 5.2 years ago by
Gordon Smyth
47k • written 5.2 years ago by
reventropy2003
▴ 10
0
votes
6
replies
1.5k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
5.3 years ago
peirinl
• 0
1
vote
3
replies
1.2k
views
Error from eBayes in limma package
eBayes
limma
error
updated 5.5 years ago by
James W. MacDonald
62k • written 5.5 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.1k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
5.9 years ago
bag59
• 0
1
vote
2
replies
1.3k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 6.0 years ago by
Gordon Smyth
47k • written 6.0 years ago by
cemcdono
• 0
1
vote
1
reply
715
views
Limma ebayes function error without any messages
limma
ebayes
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
bharata1803
▴ 40
3
votes
3
replies
1.3k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 7.5 years ago by
Gordon Smyth
47k • written 7.5 years ago by
ssrajan86
• 0
0
votes
1
reply
1.0k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 7.6 years ago by
James W. MacDonald
62k • written 7.6 years ago by
Vani
▴ 20
6
votes
5
replies
1.4k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 8.0 years ago by
Gordon Smyth
47k • written 8.0 years ago by
Paulo Nuin
▴ 200
14 results • Page
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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