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Showing :
eBayes
•
reset
6
votes
4
replies
1.1k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
2.8 years ago
snijesh
▴ 20
0
votes
5
replies
1.0k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 3.8 years ago by
Gordon Smyth
49k • written 3.8 years ago by
irene.roman
• 0
0
votes
6
replies
1.4k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 4.8 years ago by
Gordon Smyth
49k • written 4.8 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
1.3k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 5.2 years ago by
Gordon Smyth
49k • written 5.2 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
1.4k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
5.8 years ago
darthratus
• 0
1
vote
2
replies
1.3k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 6.1 years ago by
Gordon Smyth
49k • written 6.1 years ago by
reventropy2003
▴ 10
0
votes
6
replies
1.9k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
6.2 years ago
peirinl
• 0
1
vote
3
replies
1.5k
views
Error from eBayes in limma package
eBayes
limma
error
updated 6.4 years ago by
James W. MacDonald
64k • written 6.4 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.3k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
6.8 years ago
bag59
• 0
4
votes
2
replies
1.8k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 7 months ago by
Gordon Smyth
49k • written 6.9 years ago by
cemcdono
• 0
1
vote
1
reply
846
views
Limma ebayes function error without any messages
limma
ebayes
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
bharata1803
▴ 60
3
votes
3
replies
1.6k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 8.3 years ago by
Gordon Smyth
49k • written 8.3 years ago by
ssrajan86
• 0
0
votes
1
reply
1.2k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 8.4 years ago by
James W. MacDonald
64k • written 8.4 years ago by
Vani
▴ 20
6
votes
5
replies
1.7k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 8.9 years ago by
Gordon Smyth
49k • written 8.9 years ago by
Paulo Nuin
▴ 200
14 results • Page
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Replies
Comment: enrichGOgradient color change
by
James W. MacDonald
64k
You could look at my answer and extrapolate from there.
Comment: enrichGOgradient color change
by
WU
• 0
I would like to ask how to make the counts legend black. Thank you.
Answer: Problems with FLOWAI
by
Alexander
• 0
Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…
Answer: Asses fit of variance prior
by
Gordon Smyth
49k
> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…
Comment: rDGIdb package inconsistency with web interface
by
James W. MacDonald
64k
This is what I see when I go to the link you provide. ![enter image description here][1] But anyway, I cannot speak for the maintainers, …
Votes
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
How to know if I should use voomWithQualityWeights() or not?
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