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topTable MicroarrayData ebayes limma Microarray

23 months ago snijesh ▴ 20

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limma eBayes decideTests topTable

updated 2.9 years ago by Gordon Smyth 47k • written 2.9 years ago by irene.roman • 0

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limma eBayes

updated 3.9 years ago by Gordon Smyth 47k • written 3.9 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 4.3 years ago by Gordon Smyth 47k • written 4.3 years ago by CantExitVIM ▴ 10

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model.matrix lmFit eBayes GEOquery limma

4.9 years ago darthratus • 0

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ebayes limma bioconductor

updated 5.2 years ago by Gordon Smyth 47k • written 5.2 years ago by reventropy2003 ▴ 10

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ebayes limma

5.3 years ago peirinl • 0

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eBayes limma error

updated 5.5 years ago by James W. MacDonald 62k • written 5.5 years ago by calen.p.ryan • 0

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ebayes limma voom

5.9 years ago bag59 • 0

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limma ebayes

updated 6.0 years ago by Gordon Smyth 47k • written 6.0 years ago by cemcdono • 0

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715

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limma ebayes

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by bharata1803 ▴ 40

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limma ebayes statistical inference

updated 7.5 years ago by Gordon Smyth 47k • written 7.5 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 7.6 years ago by James W. MacDonald 62k • written 7.6 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 8.0 years ago by Gordon Smyth 47k • written 8.0 years ago by Paulo Nuin ▴ 200

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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…

Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

How many plants are used for each of the biological replicate samples? One plant or a few?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…

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DESeq2 pairwise comparisons w/ 3 factors

A: DESeq2 pairwise comparisons w/ 3 factors

Comment: MA plot

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