Biostar Source

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biocinstaller installation install source conda

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by jol.espinoz ▴ 40

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biocinstaller source

6.7 years ago michel.renou • 0

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security http source installation

updated 7.2 years ago by Dan Tenenbaum ★ 8.2k • written 7.2 years ago by will.townes • 0

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edgeR rpkm source code

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by thibault.lorin ▴ 10

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Comment: Data input for aracne2regulon function in viper package by xlal • 0

You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…

Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

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Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

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