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276
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
9 weeks ago Sam ▴ 10
0
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2
replies
276
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Scores used for DiffBind's dba.plotHeatmap
DiffBind
9 weeks ago Sam ▴ 10
0
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0
replies
352
views
Comment: Comment: Inconsistent results in DiffBind
5 months ago Sam ▴ 10
0
votes
2
replies
379
views
In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 5 months ago by ▴ 10
1
vote
2
replies
352
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Inconsistent results in DiffBind
DiffBind
5 months ago Sam ▴ 10
0
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0
replies
379
views
Answer: Answer: In DiffBind, dba.blacklist changes the minOverlap parameter
5 months ago Sam ▴ 10
0
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0
replies
1.9k
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
20 months ago Sam ▴ 10
0
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0
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1.9k
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
20 months ago Sam ▴ 10
0
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5
replies
1.9k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
20 months ago Sam ▴ 10
0
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0
replies
5.1k
views
Comment: Comment: Installing Bioconductor packages in Docker
21 months ago Sam ▴ 10
0
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0
replies
610
views
Creating a consensus peakset in DiffBind for all the conditions of an experiment
DiffBind
2.1 years ago Sam ▴ 10
0
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1
reply
4.7k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
2.3 years ago Sam ▴ 10
1
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2
replies
1.0k
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What lfcSE is dependent upon?
DESeq2
written 2.8 years ago by ▴ 10
2
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1
reply
672
views
Why does samples order subtly influence the results of DESeq2?
DESeq2
updated 2.8 years ago by 42k • written 2.8 years ago by ▴ 10
0
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0
replies
731
views
Comment: Comment: TOAST output
3.0 years ago Sam ▴ 10
0
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2
replies
731
views
TOAST output
TOAST
3.0 years ago Sam ▴ 10
0
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1
reply
731
views
Comment: Comment: TOAST output
3.0 years ago Sam ▴ 10
0
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1
reply
796
views
Comment: Comment: DESeq2 unmix function
3.1 years ago Sam ▴ 10
3
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3
replies
796
views
DESeq2 unmix function
DESeq2
updated 3.1 years ago by 42k • written 3.1 years ago by ▴ 10
0
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0
replies
1.4k
views
Comment: Comment: ChIPseeker: Annotating Peaks with both upstream and downstream gene
3.1 years ago Sam ▴ 10
0
votes
0
replies
847
views
What is the definition of flank_gene_distances output field in ChIPseeker
ChIPseeker
3.1 years ago Sam ▴ 10
0
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1
reply
3.0k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.1 years ago Sam ▴ 10
2
votes
3
replies
1.2k
views
DiffBind does not use DESeq2 MLE estimation of fold change
DiffBind
updated 9 months ago by ★ 5.2k • written 3.1 years ago by ▴ 10
0
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0
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3.0k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.1 years ago Sam ▴ 10
2
votes
2
replies
1.1k
views
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
DiffBind
updated 3.1 years ago by ★ 5.2k • written 3.2 years ago by ▴ 10
0
votes
1
reply
3.0k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.1 years ago Sam ▴ 10
0
votes
1
reply
4.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.1 years ago Sam ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: DiffBind: dba.contrast for interaction terms
3.1 years ago Sam ▴ 10
0
votes
0
replies
1.1k
views
Comment: Comment: A mismatch between DiffBind's results and the same results retreieved as DESeq2
3.1 years ago Sam ▴ 10
0
votes
1
reply
989
views
Comment: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
3.2 years ago Sam ▴ 10
0
votes
4
replies
989
views
How sensitive is DiffBind to Deseq2 assumptions ?
DESeq2 DiffBind
updated 3.1 years ago by ★ 5.2k • written 3.2 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Comment: Comment: How to add chr to an dba object before differential analysis to enable removing
3.2 years ago Sam ▴ 10
0
votes
0
replies
1.8k
views
Comment: Comment: Learning DiffBind - some basic questions
3.2 years ago Sam ▴ 10
0
votes
2
replies
5.0k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.2 years ago Sam ▴ 10
0
votes
0
replies
1.7k
views
Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
3.2 years ago Sam ▴ 10
0
votes
1
reply
4.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
0
votes
1
reply
4.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
0
votes
1
reply
4.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
0
votes
1
reply
1.7k
views
Comment: Comment: An attempt to better understand DESeq2 dispersion estimation
3.2 years ago Sam ▴ 10
0
votes
1
reply
4.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.2 years ago Sam ▴ 10
0
votes
2
replies
1.8k
views
Comment: Comment: Learning DiffBind - some basic questions
3.2 years ago Sam ▴ 10
1
vote
4
replies
1.7k
views
An attempt to better understand DESeq2 dispersion estimation
DESeq2
3.2 years ago Sam ▴ 10
0
votes
0
replies
5.0k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.2 years ago Sam ▴ 10
0
votes
0
replies
5.0k
views
Comment: Comment: What is the correct use of removeBatchEffect's design parameter
3.2 years ago Sam ▴ 10
0
votes
0
replies
1.2k
views
Comment: Comment: Does DiffBind correctly designate peaks with very small fold-change to be statis
3.3 years ago Sam ▴ 10
0
votes
3
replies
1.2k
views
Does DiffBind correctly designate peaks with very small fold-change to be statistically significant?
DESeq2 DiffBind
updated 3.0 years ago by ★ 5.2k • written 3.4 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: Learning DiffBind - some basic questions
3.4 years ago Sam ▴ 10
1
vote
1
reply
702
views
What is the correct interpretation of the p-value in GreyListChIP?
GreyListChIP
updated 3.4 years ago by ▴ 650 • written 3.4 years ago by ▴ 10
0
votes
1
reply
4.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.4 years ago Sam ▴ 10
0
votes
1
reply
4.7k
views
Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
3.4 years ago Sam ▴ 10
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