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1
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1
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5.9k
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Answer: A: Run featureCounts in isoform/transcript level in Rsubread
9.7 years ago Wei Shi ★ 3.6k
0
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0
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5.6k
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Answer: A: summaries featureCounts output for egeR
9.8 years ago Wei Shi ★ 3.6k
1
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0
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4.3k
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Comment: C: HTSeq-count on several gff3/gtf files for use in DESeq2
9.8 years ago Wei Shi ★ 3.6k
0
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0
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2.5k
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Comment: C: countPrimaryAlignmentsOnly=TRUE produced more counts
9.8 years ago Wei Shi ★ 3.6k
0
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2
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2.5k
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Comment: C: countPrimaryAlignmentsOnly=TRUE produced more counts
9.8 years ago Wei Shi ★ 3.6k
2
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1
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2.5k
views
Answer: A: countPrimaryAlignmentsOnly=TRUE produced more counts
9.8 years ago Wei Shi ★ 3.6k
0
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2
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2.5k
views
Answer: A: countPrimaryAlignmentsOnly=TRUE produced more counts
9.8 years ago Wei Shi ★ 3.6k
0
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0
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21k
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Comment: C: when to apply quantile normalization with voom in limma/voom framework with RNA-
updated 9.8 years ago by 53k • written 9.8 years ago by ★ 3.6k
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0
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1.3k
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Answer: A: libraries in SEQC
9.8 years ago Wei Shi ★ 3.6k
0
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0
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5.3k
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Comment: C: Fraction arguments for multi mapping reads in featureCounts in Rsubread
9.8 years ago Wei Shi ★ 3.6k
2
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1
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1.8k
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Answer: A: reporting multi-mapping locations in Subread-align
9.9 years ago Wei Shi ★ 3.6k
1
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0
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2.4k
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Answer: C: Distribution of negative controls on Illumina HT12-v4 chips (double background?)
updated 9.9 years ago by 53k • written 14.8 years ago by ★ 3.6k
0
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1
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2.4k
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Comment: A: Distribution of negative controls on Illumina HT12-v4 chips (double background?)
updated 9.9 years ago by 53k • written 14.8 years ago by ★ 3.6k
3
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0
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1.8k
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Answer: A: Rsubread error when aligning (- FATAL: INFLATE-ERROR=-5)
9.9 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
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Answer: A: Feature request for Rsubread::featureCounts: read length adjustment
updated 10.0 years ago by 53k • written 11.6 years ago by ★ 3.6k
1
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1
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5.3k
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Comment: C: Fraction arguments for multi mapping reads in featureCounts in Rsubread
10.0 years ago Wei Shi ★ 3.6k
0
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0
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6.2k
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Comment: C: Finding gene lengths of mm10 to calculate rpkm grom count matrix of rna-seq data
10.1 years ago Wei Shi ★ 3.6k
0
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1
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6.2k
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Comment: C: Finding gene lengths of mm10 to calculate rpkm grom count matrix of rna-seq data
10.1 years ago Wei Shi ★ 3.6k
0
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0
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2.3k
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Comment: C: Rsubread, featureCounts misses some exons
10.2 years ago Wei Shi ★ 3.6k
1
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0
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1.8k
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Answer: A: Rsubread align() output_file, dir not created first
10.2 years ago Wei Shi ★ 3.6k
3
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0
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1.8k
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Answer: A: Use BAM file created from subjunc function (Rsubread package) for feature counts
10.3 years ago Wei Shi ★ 3.6k
0
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0
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4.0k
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Comment: C: rsubread featurecounts returns 0% successfully assigned reads
10.3 years ago Wei Shi ★ 3.6k
0
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0
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1.7k
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Answer: A: How to interpret the fusion.txt file output from subjunc (Rsubread package)
10.4 years ago Wei Shi ★ 3.6k
4
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1
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8.6k
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Answer: A: Rsubread::featureCounts extremely slow on some annotations
10.4 years ago Wei Shi ★ 3.6k
2
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0
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1.3k
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Answer: C: Are the endpoints included in intervals for SAF format?
10.5 years ago Wei Shi ★ 3.6k
0
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1
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22k
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Comment: C: featureCounts - paired-end data
10.5 years ago Wei Shi ★ 3.6k
1
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2
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22k
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Answer: A: featureCounts - paired-end data
updated 10.5 years ago by 53k • written 10.5 years ago by ★ 3.6k
0
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1
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8.6k
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Answer: A: Rsubread::featureCounts extremely slow on some annotations
10.6 years ago Wei Shi ★ 3.6k
0
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1
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8.6k
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Answer: A: Rsubread::featureCounts extremely slow on some annotations
10.6 years ago Wei Shi ★ 3.6k
0
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1
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8.6k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
10.6 years ago Wei Shi ★ 3.6k
0
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2
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8.6k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
10.6 years ago Wei Shi ★ 3.6k
1
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0
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2.5k
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Answer: A: Error using RSubread to buildIndex with large Fasta
10.7 years ago Wei Shi ★ 3.6k
0
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0
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2.5k
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Answer: A: Error using RSubread to buildIndex with large Fasta
10.7 years ago Wei Shi ★ 3.6k
0
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2
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8.6k
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Answer: A: Rsubread::featureCounts extremely slow on some annotations
10.7 years ago Wei Shi ★ 3.6k
2
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0
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5.1k
views
Answer: A: Rsubreads - featureCount - gtf - error
10.8 years ago Wei Shi ★ 3.6k
0
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0
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3.5k
views
Comment: C: Experimental data package 'seqc'
11.0 years ago Wei Shi ★ 3.6k
9
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4
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3.5k
views
News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
11.0 years ago Wei Shi ★ 3.6k
0
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1
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3.5k
views
Answer: A: Experimental data package 'seqc'
11.0 years ago Wei Shi ★ 3.6k
2
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1
reply
1.6k
views
Answer: A: Failed assertion in subjunc aligner for large indels
11.0 years ago Wei Shi ★ 3.6k
0
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1
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4.4k
views
Comment: C: Quality filtering of exactSNP-generated VCF files
11.0 years ago Wei Shi ★ 3.6k
2
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1
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4.4k
views
Answer: A: Quality filtering of exactSNP-generated VCF files
11.0 years ago Wei Shi ★ 3.6k
3
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0
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2.5k
views
Answer: A: Possible bug in Rsubread Phred-Score read
11.0 years ago Wei Shi ★ 3.6k
1
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0
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2.5k
views
Answer: A: Possible bug in Rsubread Phred-Score read
11.0 years ago Wei Shi ★ 3.6k
1
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0
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1.4k
views
Answer: A: Can subjunc use splice sites from a reference annotation (i.e. GTF file)?
updated 11.1 years ago by 53k • written 11.8 years ago by ★ 3.6k
2
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0
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5.5k
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Answer: A: Please, could someone help me to export featureCounts (Rsubread) results?
11.1 years ago Wei Shi ★ 3.6k
0
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0
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1.1k
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Answer: A: insertion site detection
11.2 years ago Wei Shi ★ 3.6k
0
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0
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2.5k
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Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Sequencing Annotation
11.2 years ago Wei Shi ★ 3.6k
1
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1
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2.6k
views
Answer: A: Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
11.2 years ago Wei Shi ★ 3.6k
0
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1
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4.9k
views
Answer: A: Extract junction reads from bam
11.3 years ago Wei Shi ★ 3.6k
0
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0
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1.3k
views
Answer: A: Possible problem with featureCounts() and scipen
11.4 years ago Wei Shi ★ 3.6k
448 results • Page 5 of 9
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