Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
3.9k
views
Comment: C: HTSeq-count on several gff3/gtf files for use in DESeq2
9.1 years ago Wei Shi ★ 3.6k
0
votes
0
replies
2.2k
views
Comment: C: countPrimaryAlignmentsOnly=TRUE produced more counts
9.1 years ago Wei Shi ★ 3.6k
0
votes
2
replies
2.2k
views
Comment: C: countPrimaryAlignmentsOnly=TRUE produced more counts
9.1 years ago Wei Shi ★ 3.6k
2
votes
1
reply
2.2k
views
Answer: A: countPrimaryAlignmentsOnly=TRUE produced more counts
9.1 years ago Wei Shi ★ 3.6k
0
votes
2
replies
2.2k
views
Answer: A: countPrimaryAlignmentsOnly=TRUE produced more counts
9.1 years ago Wei Shi ★ 3.6k
0
votes
0
replies
20k
views
Comment: C: when to apply quantile normalization with voom in limma/voom framework with RNA-
updated 9.1 years ago by 52k • written 9.1 years ago by ★ 3.6k
0
votes
0
replies
1.2k
views
Answer: A: libraries in SEQC
9.1 years ago Wei Shi ★ 3.6k
0
votes
0
replies
4.9k
views
Comment: C: Fraction arguments for multi mapping reads in featureCounts in Rsubread
9.1 years ago Wei Shi ★ 3.6k
2
votes
1
reply
1.7k
views
Answer: A: reporting multi-mapping locations in Subread-align
9.2 years ago Wei Shi ★ 3.6k
1
vote
0
replies
2.2k
views
Answer: C: Distribution of negative controls on Illumina HT12-v4 chips (double background?)
updated 9.2 years ago by 52k • written 14.0 years ago by ★ 3.6k
0
votes
1
reply
2.2k
views
Comment: A: Distribution of negative controls on Illumina HT12-v4 chips (double background?)
updated 9.2 years ago by 52k • written 14.1 years ago by ★ 3.6k
3
votes
0
replies
1.7k
views
Answer: A: Rsubread error when aligning (- FATAL: INFLATE-ERROR=-5)
9.2 years ago Wei Shi ★ 3.6k
0
votes
1
reply
1.5k
views
Answer: A: Feature request for Rsubread::featureCounts: read length adjustment
updated 9.3 years ago by 52k • written 10.9 years ago by ★ 3.6k
1
vote
1
reply
4.9k
views
Comment: C: Fraction arguments for multi mapping reads in featureCounts in Rsubread
9.3 years ago Wei Shi ★ 3.6k
0
votes
0
replies
5.9k
views
Comment: C: Finding gene lengths of mm10 to calculate rpkm grom count matrix of rna-seq data
9.4 years ago Wei Shi ★ 3.6k
0
votes
1
reply
5.9k
views
Comment: C: Finding gene lengths of mm10 to calculate rpkm grom count matrix of rna-seq data
9.4 years ago Wei Shi ★ 3.6k
0
votes
0
replies
2.1k
views
Comment: C: Rsubread, featureCounts misses some exons
9.5 years ago Wei Shi ★ 3.6k
1
vote
0
replies
1.7k
views
Answer: A: Rsubread align() output_file, dir not created first
9.5 years ago Wei Shi ★ 3.6k
3
votes
0
replies
1.7k
views
Answer: A: Use BAM file created from subjunc function (Rsubread package) for feature counts
9.6 years ago Wei Shi ★ 3.6k
0
votes
0
replies
3.8k
views
Comment: C: rsubread featurecounts returns 0% successfully assigned reads
9.6 years ago Wei Shi ★ 3.6k
0
votes
0
replies
1.5k
views
Answer: A: How to interpret the fusion.txt file output from subjunc (Rsubread package)
9.7 years ago Wei Shi ★ 3.6k
4
votes
1
reply
7.5k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
9.7 years ago Wei Shi ★ 3.6k
2
votes
0
replies
1.2k
views
Answer: C: Are the endpoints included in intervals for SAF format?
9.8 years ago Wei Shi ★ 3.6k
0
votes
1
reply
20k
views
Comment: C: featureCounts - paired-end data
9.8 years ago Wei Shi ★ 3.6k
1
vote
2
replies
20k
views
Answer: A: featureCounts - paired-end data
updated 9.8 years ago by 52k • written 9.8 years ago by ★ 3.6k
0
votes
1
reply
7.5k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
9.9 years ago Wei Shi ★ 3.6k
0
votes
1
reply
7.5k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
9.9 years ago Wei Shi ★ 3.6k
0
votes
1
reply
7.5k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
9.9 years ago Wei Shi ★ 3.6k
0
votes
2
replies
7.5k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
9.9 years ago Wei Shi ★ 3.6k
1
vote
0
replies
2.3k
views
Answer: A: Error using RSubread to buildIndex with large Fasta
10.0 years ago Wei Shi ★ 3.6k
0
votes
0
replies
2.3k
views
Answer: A: Error using RSubread to buildIndex with large Fasta
10.0 years ago Wei Shi ★ 3.6k
0
votes
2
replies
7.5k
views
Answer: A: Rsubread::featureCounts extremely slow on some annotations
10.0 years ago Wei Shi ★ 3.6k
2
votes
0
replies
4.8k
views
Answer: A: Rsubreads - featureCount - gtf - error
10.1 years ago Wei Shi ★ 3.6k
0
votes
0
replies
3.2k
views
Comment: C: Experimental data package 'seqc'
10.3 years ago Wei Shi ★ 3.6k
0
votes
1
reply
3.2k
views
Answer: A: Experimental data package 'seqc'
10.3 years ago Wei Shi ★ 3.6k
9
votes
4
replies
3.2k
views
News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
10.3 years ago Wei Shi ★ 3.6k
2
votes
1
reply
1.4k
views
Answer: A: Failed assertion in subjunc aligner for large indels
10.3 years ago Wei Shi ★ 3.6k
0
votes
1
reply
4.1k
views
Comment: C: Quality filtering of exactSNP-generated VCF files
10.3 years ago Wei Shi ★ 3.6k
2
votes
1
reply
4.1k
views
Answer: A: Quality filtering of exactSNP-generated VCF files
10.3 years ago Wei Shi ★ 3.6k
3
votes
0
replies
2.3k
views
Answer: A: Possible bug in Rsubread Phred-Score read
10.3 years ago Wei Shi ★ 3.6k
1
vote
0
replies
2.3k
views
Answer: A: Possible bug in Rsubread Phred-Score read
10.3 years ago Wei Shi ★ 3.6k
1
vote
0
replies
1.3k
views
Answer: A: Can subjunc use splice sites from a reference annotation (i.e. GTF file)?
updated 10.4 years ago by 52k • written 11.2 years ago by ★ 3.6k
2
votes
0
replies
5.3k
views
Answer: A: Please, could someone help me to export featureCounts (Rsubread) results?
10.4 years ago Wei Shi ★ 3.6k
0
votes
0
replies
981
views
Answer: A: insertion site detection
10.5 years ago Wei Shi ★ 3.6k
0
votes
0
replies
2.4k
views
Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Sequencing Annotation
10.5 years ago Wei Shi ★ 3.6k
1
vote
1
reply
2.5k
views
Answer: A: Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
10.5 years ago Wei Shi ★ 3.6k
0
votes
1
reply
4.7k
views
Answer: A: Extract junction reads from bam
10.6 years ago Wei Shi ★ 3.6k
0
votes
0
replies
1.2k
views
Answer: A: Possible problem with featureCounts() and scipen
10.7 years ago Wei Shi ★ 3.6k
0
votes
0
replies
2.7k
views
Comment: C: featureCounts segfault
10.8 years ago Wei Shi ★ 3.6k
0
votes
1
reply
2.7k
views
Answer: A: featureCounts segfault
10.8 years ago Wei Shi ★ 3.6k
446 results • Page 5 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6