Bioconductor Subjunc

Showing : subjunc • reset

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987

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subjunc data.frame myExons Rsubread

updated 17 months ago by ATpoint ★ 4.6k • written 17 months ago by Sukeerthi • 0

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2.7k

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subjunc edgeR

2.9 years ago Assa Yeroslaviz ★ 1.5k

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3.1k

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SubRead Align Subjunc

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by abano • 0

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1.6k

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rsubread subjunc

updated 9.3 years ago by Wei Shi ★ 3.6k • written 9.3 years ago by Stephen Piccolo ▴ 600

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1.4k

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rsubread subjunc rnaseq fusion genes

updated 9.4 years ago by Wei Shi ★ 3.6k • written 9.4 years ago by misic • 0

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3.1k

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seqc rsubread featurecounts subjunc ercc News

10.1 years ago Wei Shi ★ 3.6k

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1.4k

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rnaseq subjunc indel

updated 10.1 years ago by Wei Shi ★ 3.6k • written 10.1 years ago by daniel.silvestre ▴ 100

7 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

I agree that the current behavior is not entirely satisfactory and, indeed, it has prevented me from using the junction read counts from fe…

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Sorry, I didn't see the added response to your original answer. I think that would be a great idea; a novel junction to annot…

Comment: Cannot install GO.db and org.Hs.eg.db by Gabriel • 0

The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Votes

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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