Bioconductor Ercc

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995

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ImpulseDE2 ImpulseDE ERCC RUVSeq

3.2 years ago • updated 3.1 years ago Mallory ▴ 10

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3.3k

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ERCC rna-seq edgeR tmm normalised values

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by what_theheck24 • 0

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16k

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RNAseq deseq2 ercc

updated 8.2 years ago by Simon Anders ★ 3.8k • written 8.2 years ago by mbeckste ▴ 30

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7.9k

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limma voom deseq normalization ercc

updated 9.1 years ago by Gordon Smyth 52k • written 9.1 years ago by komal.rathi ▴ 120

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5.6k

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edger ercc

10.0 years ago John ▴ 10

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3.1k

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seqc rsubread featurecounts subjunc ercc News

10.1 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…

Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…

Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…

Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k

Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …

Votes

Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

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