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average difference and global scaling for normalizing affymetrix expression data?
Microarray limma Microarray limma
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 410
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1.8k
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Comment: C: row clustering in heatmap.2
15.8 years ago Johnstone, Alice ▴ 410
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2
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1.8k
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row clustering in heatmap.2
GO Clustering GO Clustering
updated 15.8 years ago by ▴ 400 • written 15.8 years ago by ▴ 410
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0
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883
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GSEA GeneSetCollection for GO info from Illumina annotation package
Annotation GO Annotation GO
15.9 years ago Johnstone, Alice ▴ 410
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0
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943
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Comment: C: GSEA GeneSetCollection
15.9 years ago Johnstone, Alice ▴ 410
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2
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943
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GSEA GeneSetCollection
GO GO
updated 15.9 years ago by 25k • written 15.9 years ago by ▴ 410
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0
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815
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Answer: A: readBeadSummaryData problem- duplicate row name error
16.1 years ago Johnstone, Alice ▴ 410
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1
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701
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How to remove probes from Illumina data?
GO GO
updated 16.1 years ago by ▴ 460 • written 16.1 years ago by ▴ 410
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0
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824
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Answer: A: What should happen to control probe information in bead level Illumina analyses?
16.1 years ago Johnstone, Alice ▴ 410
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0
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627
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What should happen to control probe information in bead level Illumina analyses?
16.1 years ago Johnstone, Alice ▴ 410
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0
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710
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Help for readIllumina beadlevel error
16.2 years ago Johnstone, Alice ▴ 410
0
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1
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806
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Help for readIllumina beadlevel error
updated 16.2 years ago by ▴ 460 • written 16.2 years ago by ▴ 410
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1
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714
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Illumina array quality checking and RegGrn values..
updated 16.2 years ago by ★ 3.6k • written 16.2 years ago by ▴ 410
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0
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1.2k
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Expired Illumina expression chip - advice for use and experimental design
GO limma DOSE GO limma DOSE
16.2 years ago Johnstone, Alice ▴ 410
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0
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710
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Answer: A: readBeadSummaryData() in beadarray package
16.3 years ago Johnstone, Alice ▴ 410
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1
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955
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Comment: C: Empty featureData slot in beadsummary IlluminaExpressionSet object
16.3 years ago Johnstone, Alice ▴ 410
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3
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955
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Empty featureData slot in beadsummary IlluminaExpressionSet object
updated 16.3 years ago by ▴ 460 • written 16.3 years ago by ▴ 410
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1
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1.5k
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Answer: A: About beadarray normaliseIllumina() warning messages
16.3 years ago Johnstone, Alice ▴ 410
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1
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1.2k
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Comment: C: Help with base file in AnnBuilder
16.5 years ago Johnstone, Alice ▴ 410
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1
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1.2k
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Comment: C: Help with base file in AnnBuilder
16.5 years ago Johnstone, Alice ▴ 410
0
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2
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1.2k
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Comment: C: Help with base file in AnnBuilder
16.5 years ago Johnstone, Alice ▴ 410
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8
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1.2k
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Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
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2
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746
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Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
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0
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1.0k
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Comment: C: BeadExplorer error
16.5 years ago Johnstone, Alice ▴ 410
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2
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1.0k
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BeadExplorer error
BeadExplorer BeadExplorer
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 410
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0
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961
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Answer: A: About beadarray package
16.6 years ago Johnstone, Alice ▴ 410
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1
reply
961
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Answer: A: About beadarray package
16.6 years ago Johnstone, Alice ▴ 410
0
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1
reply
961
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Answer: A: About beadarray package
16.6 years ago Johnstone, Alice ▴ 410
0
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0
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666
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FW: how to 'bootstrap' expression data?
qPCR GO probe qPCR GO probe
16.6 years ago Johnstone, Alice ▴ 410
0
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2
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948
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how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 16.6 years ago by ★ 6.5k • written 16.6 years ago by ▴ 410
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0
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850
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Answer: A: Error loading Illumina data LumiR
16.6 years ago Johnstone, Alice ▴ 410
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1
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850
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Error loading Illumina data LumiR
lumi lumi
16.6 years ago Johnstone, Alice ▴ 410
0
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0
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873
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Answer: A: lty argument not recognised in plot function]
16.6 years ago Johnstone, Alice ▴ 410
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0
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945
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lty argument not recognised in plot function
16.7 years ago Johnstone, Alice ▴ 410
0
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0
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1.5k
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Answer: A: Lumi warning and question
16.7 years ago Johnstone, Alice ▴ 410
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0
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2.2k
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Answer: A: Illumina bead arrays
16.7 years ago Johnstone, Alice ▴ 410
0
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0
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937
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Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
16.7 years ago Johnstone, Alice ▴ 410
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1
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1.4k
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ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 410
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2
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2.5k
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read.phenoData vs read.AnnotatedDataFrame
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ▴ 410
0
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3
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726
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read.phenoData vs read.AnnotatedDataFrame
16.8 years ago Johnstone, Alice ▴ 410
0
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0
replies
726
views
Answer: A: read.phenoData vs read.AnnotatedDataFrame
16.8 years ago Johnstone, Alice ▴ 410
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