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average difference and global scaling for normalizing affymetrix expression data?
Microarray limma Microarray limma
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ▴ 410
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Comment: C: row clustering in heatmap.2
17.6 years ago Johnstone, Alice ▴ 410
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2
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2.2k
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row clustering in heatmap.2
GO Clustering GO Clustering
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 410
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1.1k
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GSEA GeneSetCollection for GO info from Illumina annotation package
Annotation GO Annotation GO
17.6 years ago Johnstone, Alice ▴ 410
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1.2k
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Comment: C: GSEA GeneSetCollection
17.6 years ago Johnstone, Alice ▴ 410
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2
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1.2k
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GSEA GeneSetCollection
GO GO
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 410
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1.0k
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Answer: A: readBeadSummaryData problem- duplicate row name error
17.8 years ago Johnstone, Alice ▴ 410
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1
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976
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How to remove probes from Illumina data?
GO GO
updated 17.8 years ago by ▴ 460 • written 17.8 years ago by ▴ 410
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1.2k
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Answer: A: What should happen to control probe information in bead level Illumina analyses?
17.9 years ago Johnstone, Alice ▴ 410
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0
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849
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What should happen to control probe information in bead level Illumina analyses?
17.9 years ago Johnstone, Alice ▴ 410
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0
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891
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Help for readIllumina beadlevel error
17.9 years ago Johnstone, Alice ▴ 410
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1
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1.0k
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Help for readIllumina beadlevel error
updated 17.9 years ago by ▴ 460 • written 17.9 years ago by ▴ 410
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1
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938
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Illumina array quality checking and RegGrn values..
updated 17.9 years ago by ★ 3.6k • written 17.9 years ago by ▴ 410
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0
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1.5k
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Expired Illumina expression chip - advice for use and experimental design
GO limma DOSE GO limma DOSE
18.0 years ago Johnstone, Alice ▴ 410
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948
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Answer: A: readBeadSummaryData() in beadarray package
18.0 years ago Johnstone, Alice ▴ 410
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1
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1.3k
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Comment: C: Empty featureData slot in beadsummary IlluminaExpressionSet object
18.0 years ago Johnstone, Alice ▴ 410
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3
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1.3k
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Empty featureData slot in beadsummary IlluminaExpressionSet object
updated 18.0 years ago by ▴ 460 • written 18.0 years ago by ▴ 410
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1
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2.1k
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Answer: A: About beadarray normaliseIllumina() warning messages
18.0 years ago Johnstone, Alice ▴ 410
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1
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1.7k
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Comment: C: Help with base file in AnnBuilder
18.2 years ago Johnstone, Alice ▴ 410
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1
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1.7k
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Comment: C: Help with base file in AnnBuilder
18.2 years ago Johnstone, Alice ▴ 410
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2
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1.7k
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Comment: C: Help with base file in AnnBuilder
18.2 years ago Johnstone, Alice ▴ 410
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8
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1.7k
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Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 410
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2
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1.0k
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Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 410
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1.3k
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Comment: C: BeadExplorer error
18.2 years ago Johnstone, Alice ▴ 410
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2
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1.3k
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BeadExplorer error
BeadExplorer BeadExplorer
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 410
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1.5k
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Answer: A: About beadarray package
18.3 years ago Johnstone, Alice ▴ 410
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1
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1.5k
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Answer: A: About beadarray package
18.3 years ago Johnstone, Alice ▴ 410
0
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1
reply
1.5k
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Answer: A: About beadarray package
18.3 years ago Johnstone, Alice ▴ 410
0
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0
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834
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FW: how to 'bootstrap' expression data?
qPCR GO probe qPCR GO probe
18.3 years ago Johnstone, Alice ▴ 410
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2
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1.2k
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how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 18.3 years ago by ★ 6.5k • written 18.3 years ago by ▴ 410
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1.1k
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Answer: A: Error loading Illumina data LumiR
18.3 years ago Johnstone, Alice ▴ 410
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1
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1.1k
views
Error loading Illumina data LumiR
lumi lumi
18.3 years ago Johnstone, Alice ▴ 410
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0
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1.2k
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Answer: A: lty argument not recognised in plot function]
18.4 years ago Johnstone, Alice ▴ 410
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0
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1.2k
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lty argument not recognised in plot function
18.4 years ago Johnstone, Alice ▴ 410
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0
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2.3k
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Answer: A: Lumi warning and question
18.4 years ago Johnstone, Alice ▴ 410
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0
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3.0k
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Answer: A: Illumina bead arrays
18.4 years ago Johnstone, Alice ▴ 410
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0
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1.3k
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Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
18.4 years ago Johnstone, Alice ▴ 410
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1
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1.8k
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ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 18.4 years ago by ▴ 320 • written 18.4 years ago by ▴ 410
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2
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2.9k
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read.phenoData vs read.AnnotatedDataFrame
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 410
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3
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1.1k
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read.phenoData vs read.AnnotatedDataFrame
18.5 years ago Johnstone, Alice ▴ 410
0
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0
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1.1k
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Answer: A: read.phenoData vs read.AnnotatedDataFrame
18.5 years ago Johnstone, Alice ▴ 410
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