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average difference and global scaling for normalizing affymetrix expression data?
Microarray limma Microarray limma
updated 11.9 years ago by 13k • written 11.9 years ago by ▴ 410
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1.5k
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Comment: C: row clustering in heatmap.2
14.0 years ago Johnstone, Alice ▴ 410
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2
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1.5k
views
row clustering in heatmap.2
GO Clustering GO Clustering
updated 14.0 years ago by ▴ 400 • written 14.0 years ago by ▴ 410
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0
replies
690
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GSEA GeneSetCollection for GO info from Illumina annotation package
Annotation GO Annotation GO
14.0 years ago Johnstone, Alice ▴ 410
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0
replies
728
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Comment: C: GSEA GeneSetCollection
14.0 years ago Johnstone, Alice ▴ 410
0
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2
replies
728
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GSEA GeneSetCollection
GO GO
updated 14.1 years ago by 25k • written 14.1 years ago by ▴ 410
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0
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672
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Answer: A: readBeadSummaryData problem- duplicate row name error
14.2 years ago Johnstone, Alice ▴ 410
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1
reply
519
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How to remove probes from Illumina data?
GO GO
updated 14.3 years ago by ▴ 460 • written 14.3 years ago by ▴ 410
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0
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606
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Answer: A: What should happen to control probe information in bead level Illumina analyses?
14.3 years ago Johnstone, Alice ▴ 410
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0
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466
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What should happen to control probe information in bead level Illumina analyses?
14.3 years ago Johnstone, Alice ▴ 410
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0
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458
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Help for readIllumina beadlevel error
14.3 years ago Johnstone, Alice ▴ 410
0
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1
reply
610
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Help for readIllumina beadlevel error
updated 14.3 years ago by ▴ 460 • written 14.3 years ago by ▴ 410
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1
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536
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Illumina array quality checking and RegGrn values..
updated 14.3 years ago by ★ 3.4k • written 14.3 years ago by ▴ 410
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0
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885
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Expired Illumina expression chip - advice for use and experimental design
GO limma DOSE GO limma DOSE
14.4 years ago Johnstone, Alice ▴ 410
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0
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485
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Answer: A: readBeadSummaryData() in beadarray package
14.4 years ago Johnstone, Alice ▴ 410
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1
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734
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Comment: C: Empty featureData slot in beadsummary IlluminaExpressionSet object
14.4 years ago Johnstone, Alice ▴ 410
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3
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734
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Empty featureData slot in beadsummary IlluminaExpressionSet object
updated 14.5 years ago by ▴ 460 • written 14.4 years ago by ▴ 410
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1
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1.0k
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Answer: A: About beadarray normaliseIllumina() warning messages
14.5 years ago Johnstone, Alice ▴ 410
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1
reply
784
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Comment: C: Help with base file in AnnBuilder
14.6 years ago Johnstone, Alice ▴ 410
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1
reply
784
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Comment: C: Help with base file in AnnBuilder
14.6 years ago Johnstone, Alice ▴ 410
0
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2
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784
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Comment: C: Help with base file in AnnBuilder
14.6 years ago Johnstone, Alice ▴ 410
0
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8
replies
784
views
Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 14.6 years ago by 60k • written 14.6 years ago by ▴ 410
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2
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555
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Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 14.7 years ago by 60k • written 14.7 years ago by ▴ 410
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0
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813
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Comment: C: BeadExplorer error
14.7 years ago Johnstone, Alice ▴ 410
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2
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813
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BeadExplorer error
BeadExplorer BeadExplorer
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 410
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0
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652
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Answer: A: About beadarray package
14.7 years ago Johnstone, Alice ▴ 410
0
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1
reply
652
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Answer: A: About beadarray package
14.7 years ago Johnstone, Alice ▴ 410
0
votes
1
reply
652
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Answer: A: About beadarray package
14.7 years ago Johnstone, Alice ▴ 410
0
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0
replies
529
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FW: how to 'bootstrap' expression data?
qPCR GO probe qPCR GO probe
14.8 years ago Johnstone, Alice ▴ 410
0
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2
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667
views
how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 14.8 years ago by 6.5k • written 14.8 years ago by ▴ 410
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0
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625
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Answer: A: Error loading Illumina data LumiR
14.8 years ago Johnstone, Alice ▴ 410
0
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1
reply
625
views
Error loading Illumina data LumiR
lumi lumi
14.8 years ago Johnstone, Alice ▴ 410
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0
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599
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Answer: A: lty argument not recognised in plot function]
14.8 years ago Johnstone, Alice ▴ 410
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0
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610
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lty argument not recognised in plot function
14.8 years ago Johnstone, Alice ▴ 410
0
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0
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758
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Answer: A: Lumi warning and question
14.8 years ago Johnstone, Alice ▴ 410
0
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0
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1.6k
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Answer: A: Illumina bead arrays
14.9 years ago Johnstone, Alice ▴ 410
0
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0
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652
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Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
14.9 years ago Johnstone, Alice ▴ 410
0
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1
reply
863
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ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 14.9 years ago by ▴ 320 • written 14.9 years ago by ▴ 410
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2
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2.0k
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read.phenoData vs read.AnnotatedDataFrame
updated 14.9 years ago by ★ 7.4k • written 14.9 years ago by ▴ 410
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0
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563
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Answer: A: read.phenoData vs read.AnnotatedDataFrame
14.9 years ago Johnstone, Alice ▴ 410
0
votes
3
replies
563
views
read.phenoData vs read.AnnotatedDataFrame
14.9 years ago Johnstone, Alice ▴ 410
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