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Comment: C: limma: correcting for a correlation between contrasts
updated 11.0 years ago by 53k • written 12.3 years ago by ▴ 650
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Comment: C: DEXSeq for DE of antisense transcription
11.0 years ago Alex Gutteridge ▴ 650
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DEXSeq for DE of antisense transcription
dexseq antisense
updated 11.0 years ago by ★ 13k • written 11.0 years ago by ▴ 650
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Comment: C: DEXSeq continous variable in model
11.2 years ago Alex Gutteridge ▴ 650
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DEXSeq continous variable in model
RNASeq TimeCourse timecourse DEXSeq DESeq2 RNASeq TimeCourse timecourse DEXSeq DESeq2
updated 11.2 years ago by ★ 1.9k • written 11.2 years ago by ▴ 650
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DEXSeq continous variable in model
RNASeq GO DEXSeq DESeq2 RNASeq GO DEXSeq DESeq2
11.2 years ago Alex Gutteridge ▴ 650
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Answer: A: DEXSeq continous variable in model
11.2 years ago Alex Gutteridge ▴ 650
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Comment: C: RRBS question
11.8 years ago Alex Gutteridge ▴ 650
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1.6k
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RRBS question
updated 11.8 years ago by ★ 4.2k • written 11.8 years ago by ▴ 650
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Answer: A: plot methylation figure for end analysis
12.1 years ago Alex Gutteridge ▴ 650
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limma: correcting for a correlation between contrasts
limma limma
updated 12.3 years ago by 53k • written 12.3 years ago by ▴ 650
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928
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Semantics of GenomicRanges gaps()
GenomicRanges GenomicRanges
12.4 years ago Alex Gutteridge ▴ 650
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Comment: C: bsseq and BSmooth with RRBS
12.7 years ago Alex Gutteridge ▴ 650
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2.4k
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bsseq and BSmooth with RRBS
Sequencing bsseq Sequencing bsseq
updated 12.7 years ago by ★ 6.5k • written 12.7 years ago by ▴ 650
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Comment: C: Fwd: statistical test for time course data
12.7 years ago Alex Gutteridge ▴ 650
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2.9k
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Comment: C: Getting counts for previously undetected transcripts and genes with easyRNASeq:
12.9 years ago Alex Gutteridge ▴ 650
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1.5k
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Comment: C: weired bayseq results
12.9 years ago Alex Gutteridge ▴ 650
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3.0k
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Answer: A: Introns in exons and vice versa (Genomic Features)
13.1 years ago Alex Gutteridge ▴ 650
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1.7k
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Comment: C: Advice on experimental setup
13.1 years ago Alex Gutteridge ▴ 650
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1.7k
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Answer: A: Advice on experimental setup
13.1 years ago Alex Gutteridge ▴ 650
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Comment: C: Gene enrichment question
13.2 years ago Alex Gutteridge ▴ 650
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Comment: C: extracting specific columns in R
13.2 years ago Alex Gutteridge ▴ 650
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1.7k
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Comment: C: Visualizing the region of classification uncertainty on thresholded images
13.2 years ago Alex Gutteridge ▴ 650
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1.7k
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Answer: A: Visualizing the region of classification uncertainty on thresholded images
13.2 years ago Alex Gutteridge ▴ 650
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1
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1.4k
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Rsamtools: Read a bam line by line
GO Rsamtools GO Rsamtools
updated 13.3 years ago by 25k • written 13.3 years ago by ▴ 650
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3.5k
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Comment: C: LIMMA decideTests result zero from contrast matrix
13.5 years ago Alex Gutteridge ▴ 650
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1.3k
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Comment: C: Odd behaviour with renameSeqlevels
13.5 years ago Alex Gutteridge ▴ 650
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3
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1.3k
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Odd behaviour with renameSeqlevels
updated 13.5 years ago by ★ 6.8k • written 13.5 years ago by ▴ 650
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3.5k
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Comment: C: problems with strand in predictCoding
13.5 years ago Alex Gutteridge ▴ 650
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1
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1.7k
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Comment: C: Complementing alleles in a VCF
13.5 years ago Alex Gutteridge ▴ 650
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1.7k
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Complementing alleles in a VCF
VariantAnnotation BSgenome BSgenome genomes VariantAnnotation VariantAnnotation BSgenome
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 650
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Comment: C: Finding coding SNPs with predictCoding
13.5 years ago Alex Gutteridge ▴ 650
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Comment: C: how to make line graph
13.6 years ago Alex Gutteridge ▴ 650
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1.8k
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Comment: C: Finding coding SNPs with predictCoding
13.6 years ago Alex Gutteridge ▴ 650
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1.8k
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Answer: A: Finding coding SNPs with predictCoding
13.7 years ago Alex Gutteridge ▴ 650
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1.4k
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dbSNP strand information
SNPlocs safe SNPlocs safe
13.7 years ago Alex Gutteridge ▴ 650
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3
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1.8k
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Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 650
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4
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1.8k
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Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 650
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2.3k
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Comment: C: Help with promoter analysis
13.7 years ago Alex Gutteridge ▴ 650
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1
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2.3k
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Answer: A: Help with promoter analysis
13.7 years ago Alex Gutteridge ▴ 650
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1
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1.8k
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Comment: C: Finding coding SNPs with predictCoding
13.7 years ago Alex Gutteridge ▴ 650
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1.2k
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Answer: A: Problem with limma's topTable lfc filter when more than 1 contrast is in output
13.8 years ago Alex Gutteridge ▴ 650
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0
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2.6k
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Answer: A: collapseRows function
14.1 years ago Alex Gutteridge ▴ 650
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2.6k
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Answer: A: collapseRows function
14.1 years ago Alex Gutteridge ▴ 650
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1
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1.9k
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Comment: C: ShortRead error when reading BAM file
14.1 years ago Alex Gutteridge ▴ 650
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1
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1.9k
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Comment: C: ShortRead error when reading BAM file
14.1 years ago Alex Gutteridge ▴ 650
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5
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1.9k
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ShortRead error when reading BAM file
ShortRead ShortRead
updated 14.1 years ago by 25k • written 14.1 years ago by ▴ 650
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1.7k
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Answer: A: question on SPIA pavkage application
14.2 years ago Alex Gutteridge ▴ 650
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1.5k
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Answer: A: a question on SPIA package
14.2 years ago Alex Gutteridge ▴ 650
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1.4k
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Comment: C: single color using Limma : very low p-value "1.40456052121752e-60"
14.2 years ago Alex Gutteridge ▴ 650
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