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questions
0
votes
0
replies
1.3k
views
RPKM calculation genewise
Normalization
Visualization
easyRNASeq
Normalization
Visualization
easyRNASeq
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
849
views
easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation
Organism
easyRNASeq
Annotation
Organism
easyRNASeq
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
885
views
easyRNASeq read counts varying when recounting same sample!
Annotation
GO
biomaRt
easyRNASeq
Annotation
GO
biomaRt
easyRNASeq
11.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
3
replies
869
views
Error when splitting an AAStringSet
updated 11.3 years ago by
Valerie Obenchain
★ 6.8k • written 11.3 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.3k
views
get synthetic exon dataset with easyRNASeq
RNASeq
Alignment
Annotation
Normalization
GO
PROcess
GenomicRanges
DEXSeq
easyRNASeq
GO
11.5 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
860
views
question on easyRNASeq developer version
GLAD
easyRNASeq
GLAD
easyRNASeq
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
913
views
get synthetic exon dataset with easyRNASeq
RNASeq
Annotation
Normalization
GO
PROcess
easyRNASeq
RNASeq
Annotation
Normalization
GO
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
860
views
warnings on easyRNASeq package
Annotation
Organism
PROcess
GenomicRanges
easyRNASeq
Annotation
Organism
PROcess
updated 11.6 years ago by
Mun Hua Tan
▴ 10 • written 11.6 years ago by
delhomme@embl.de
★ 1.2k
0
votes
6
replies
1.3k
views
question on easyRNASeq developer version
easyRNASeq
easyRNASeq
updated 11.6 years ago by
RenéBöttcher
▴ 20 • written 11.6 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
736
views
IRanges: Error in mk_singleBracketReplacementValue(x, value)
Organism
Organism
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
2
replies
1.3k
views
Error of GTF Annotation in easyRNASeq
miRNA
Annotation
easyRNASeq
miRNA
Annotation
easyRNASeq
11.6 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
893
views
Regarding an issue with easyRNASeq - from Surjyendu Ray.
Organism
edgeR
easyRNASeq
Organism
edgeR
easyRNASeq
11.7 years ago
delhomme@embl.de
★ 1.2k
0
votes
5
replies
2.4k
views
EasyRNASeq issue (missing bai files)
GO
PROcess
DESeq
easyRNASeq
GO
PROcess
DESeq
easyRNASeq
updated 11.8 years ago by
Jorge Beira
▴ 10 • written 11.8 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
888
views
reads of different lengths (easyRNASeq)
Annotation
Organism
BSgenome
convert
BSgenome
easyRNASeq
Annotation
Organism
BSgenome
11.9 years ago
delhomme@embl.de
★ 1.2k
0
votes
6
replies
1.5k
views
IRanges coverage integer limit?
Coverage
IRanges
Coverage
IRanges
updated 11.9 years ago by
Hervé Pagès
16k • written 11.9 years ago by
delhomme@embl.de
★ 1.2k
0
votes
1
reply
818
views
IRanges: the width argument of the coverage function
Coverage
Coverage
updated 11.9 years ago by
Hervé Pagès
16k • written 11.9 years ago by
delhomme@embl.de
★ 1.2k
0
votes
4
replies
797
views
Getting the length of every element from a large CompressedIRangesList is slow
IRanges
IRanges
11.9 years ago
delhomme@embl.de
★ 1.2k
0
votes
3
replies
2.1k
views
DESeq estimateDispersions() problem
DESeq
DESeq
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
delhomme@embl.de
★ 1.2k
0
votes
4
replies
1.1k
views
easyRNAseq question
easyRNASeq
easyRNASeq
updated 12.0 years ago by
Akula, Nirmala NIH/NIMH [C]
▴ 190 • written 12.0 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
731
views
Fwd: [Bioc-devel] Changes in the %in% function for DNAStringSet?
12.0 years ago
delhomme@embl.de
★ 1.2k
0
votes
10
replies
1.8k
views
How to convert from IRanges(List) to Rle(List)
convert
IRanges
convert
IRanges
updated 12.1 years ago by
Martin Morgan
25k • written 12.1 years ago by
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.0k
views
How to combine different annotation (chromosomic, genic) when using easyRNASeq (was easyRNASeq error)
RNASeq
Annotation
Organism
biomaRt
easyRNASeq
RNASeq
Annotation
Organism
biomaRt
updated 12.2 years ago by
Davis, Wade
▴ 350 • written 12.2 years ago by
delhomme@embl.de
★ 1.2k
0
votes
4
replies
1.7k
views
easyRNASeq error
Sequencing
Alignment
Annotation
Organism
BSgenome
biomaRt
BSgenome
easyRNASeq
Sequencing
12.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
889
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation
convert
genomeIntervals
Annotation
convert
genomeIntervals
12.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
0
replies
1.1k
views
using easyRNASeq examples
RNASeq
Annotation
BSgenome
convert
biomaRt
BSgenome
IRanges
DESeq
easyRNASeq
RNASeq
12.2 years ago
delhomme@embl.de
★ 1.2k
0
votes
2
replies
929
views
Integer overflow when summing an 'integer' Rle
Coverage
IRanges
Coverage
IRanges
updated 12.3 years ago by
Hervé Pagès
16k • written 12.3 years ago by
delhomme@embl.de
★ 1.2k
0
votes
12
replies
2.0k
views
Job offer at EMBL Heidelberg
Sequencing
Sequencing
updated 15.3 years ago by
Arteaga-Salas, Jose M
▴ 20 • written 15.3 years ago by
delhomme@embl.de
★ 1.2k
27 results • Page
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