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Answer: A: Filtering is not recommended with LIMMA?
12.6 years ago Wolfgang Huber ★ 13k
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3.8k
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Answer: A: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
12.6 years ago Wolfgang Huber ★ 13k
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1.7k
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Comment: C: Accessing old versions of bioc packages
12.6 years ago Wolfgang Huber ★ 13k
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6.1k
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Comment: C: DESeq Variance Stabilizing Transformation
12.6 years ago Wolfgang Huber ★ 13k
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1.4k
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Answer: A: cellHTS2 and channelNames
12.6 years ago Wolfgang Huber ★ 13k
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1.4k
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Answer: A: cellHTS2 and channelNames
12.7 years ago Wolfgang Huber ★ 13k
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3.2k
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Comment: C: Analyzing technical replicates with DESeq2
12.7 years ago Wolfgang Huber ★ 13k
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1.9k
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Comment: C: edgeR: Using ratios (translational efficiencies) as input
12.7 years ago Wolfgang Huber ★ 13k
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2.0k
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Postdoc RNA-Interactome at EMBL
Sequencing Sequencing
12.7 years ago Wolfgang Huber ★ 13k
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3
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1.5k
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rhd5 reading variable-length strings
rhdf5 rhdf5
updated 12.7 years ago by ▴ 110 • written 12.7 years ago by ★ 13k
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949
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Answer: A: MA plots and assumptions
12.7 years ago Wolfgang Huber ★ 13k
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1.5k
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Answer: A: Mass spectrometry data analysis
12.7 years ago Wolfgang Huber ★ 13k
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3.3k
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Answer: A: brief quesion on DESeq2
12.7 years ago Wolfgang Huber ★ 13k
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0
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2.1k
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Answer: A: nsfilter error from expressionset obtained after using aroma for processing
12.7 years ago Wolfgang Huber ★ 13k
0
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5
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3.9k
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DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 12.8 years ago by 43k • written 12.8 years ago by ★ 13k
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1.8k
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Answer: A: displaying the image with EBImage
12.8 years ago Wolfgang Huber ★ 13k
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1.9k
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Comment: C: EBImage: filtering in the presence of NAs
12.8 years ago Wolfgang Huber ★ 13k
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1.9k
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Answer: A: EBImage: filtering in the presence of NAs
12.8 years ago Wolfgang Huber ★ 13k
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17k
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Comment: C: DESeq - plotPCA
12.8 years ago Wolfgang Huber ★ 13k
0
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1
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2.3k
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illegal operand when I run DEXSeq
DEXSeq DEXSeq
updated 12.8 years ago by ★ 1.3k • written 12.8 years ago by ★ 13k
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6
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2.5k
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Log transformation and left censoring
limma edgeR DESeq limma edgeR DESeq
updated 12.9 years ago by 53k • written 12.9 years ago by ★ 13k
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2.5k
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Comment: C: Log transformation and left censoring
12.9 years ago Wolfgang Huber ★ 13k
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1
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2.6k
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Comment: C: rhdf5 and factors
12.9 years ago Wolfgang Huber ★ 13k
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2.6k
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Comment: C: is it possible to find sample batch # in CEL files?
12.9 years ago Wolfgang Huber ★ 13k
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1
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1.7k
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Answer: A: Problem with biomaRt update in R-2.15.1
13.0 years ago Wolfgang Huber ★ 13k
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3.2k
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Comment: C: problem with manipulating graphs created from dot files read by agread()
13.0 years ago Wolfgang Huber ★ 13k
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0
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1.6k
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Answer: A: Can Bioconductor be used offline?
13.0 years ago Wolfgang Huber ★ 13k
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2.5k
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Answer: A: biomaRt and RCurl
13.0 years ago Wolfgang Huber ★ 13k
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0
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2.0k
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Answer: A: filtering before using DESeq
13.0 years ago Wolfgang Huber ★ 13k
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1
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2.0k
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Comment: C: filtering before using DESeq
13.0 years ago Wolfgang Huber ★ 13k
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1
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2.9k
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Comment: C: vmatchPDict?
13.0 years ago Wolfgang Huber ★ 13k
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1.9k
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Comment: C: Most diff exp genes are up-regulated... can this be true?
13.1 years ago Wolfgang Huber ★ 13k
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1.9k
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Comment: C: Most diff exp genes are up-regulated... can this be true?
13.1 years ago Wolfgang Huber ★ 13k
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1
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2.2k
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Answer: A: arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
13.1 years ago Wolfgang Huber ★ 13k
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1
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1.8k
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Comment: C: arrayQualityMetrics run as batch-job: unable to start device PNG
13.1 years ago Wolfgang Huber ★ 13k
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5.2k
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Comment: C: edgeR/DESeq for ChIP-seq analysis
13.1 years ago Wolfgang Huber ★ 13k
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2
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1.6k
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pam implementation
pamr pamr
updated 13.1 years ago by ▴ 280 • written 13.2 years ago by ★ 13k
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0
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2.6k
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Comment: C: Missing Values after cyclic loess in limma
13.2 years ago Wolfgang Huber ★ 13k
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0
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2.6k
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Answer: A: Missing Values after cyclic loess in limma
13.2 years ago Wolfgang Huber ★ 13k
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0
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932
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unbiased filtering of paired dataset
13.2 years ago Wolfgang Huber ★ 13k
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0
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1.3k
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Answer: A: [cellHTS2] error message with DualChannelScreen on example dataset
13.2 years ago Wolfgang Huber ★ 13k
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0
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1.6k
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Comment: C: normalizing RNAseq with batch/block-level bulk DE
13.2 years ago Wolfgang Huber ★ 13k
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1
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1.6k
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Answer: A: normalizing RNAseq with batch/block-level bulk DE
13.2 years ago Wolfgang Huber ★ 13k
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1
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1.8k
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Answer: A: DESeq diagnostics
13.2 years ago Wolfgang Huber ★ 13k
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2.9k
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Answer: A: plotPCA error
13.2 years ago Wolfgang Huber ★ 13k
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4.0k
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Comment: C: DEseq version and R version compatibility
13.2 years ago Wolfgang Huber ★ 13k
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1.5k
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Answer: A: DESeq cuont table normalization
13.3 years ago Wolfgang Huber ★ 13k
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2
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2.1k
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Answer: A: Bioconductor's qvalue package not working on Macs!
13.3 years ago Wolfgang Huber ★ 13k
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0
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1.8k
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Answer: A: DESeq - Estimating Dispersion with Technical Replicates
13.3 years ago Wolfgang Huber ★ 13k
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1
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1.2k
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Comment: C: DESeq error
13.3 years ago Wolfgang Huber ★ 13k
1,433 results • Page 8 of 29
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