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0
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10.0k
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deseq2: convert ensembl ID to gene symbol.
DEXSeq DESeq2 DEXSeq DESeq2
updated 5.7 years ago by • 0 • written 9.7 years ago by ▴ 970
1
vote
3
replies
2.1k
views
GO terms: Annotation for HumanMethylation450
Annotation GO probe Annotation GO probe
updated 6.1 years ago by • 0 • written 11.1 years ago by ▴ 970
0
votes
3
replies
4.0k
views
How to get the all CpG sites genome postion for mm9?
updated 7.7 years ago by • 0 • written 13.3 years ago by ▴ 970
0
votes
4
replies
3.1k
views
Deseq2 for down stream analysis
DESeq DESeq
updated 9.7 years ago by 41k • written 9.7 years ago by ▴ 970
0
votes
1
reply
972
views
Is there any package for meta eqtl?
GGtools GGtools
updated 10.1 years ago by 6.7k • written 10.1 years ago by ▴ 970
0
votes
4
replies
1.3k
views
Annotation different expressed exon. results from DESeq
DESeq DESeq
updated 10.2 years ago by ★ 1.9k • written 10.2 years ago by ▴ 970
0
votes
6
replies
1.7k
views
How to get gene symbol after deseq?
DESeq DESeq
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 970
0
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6
replies
1.4k
views
DEXseq error on estimatelog2FoldChanges
DEXSeq DEXSeq
10.3 years ago Fabrice Tourre ▴ 970
4
votes
6
replies
2.9k
views
kmer and zscore calculation
updated 10.4 years ago by 16k • written 10.4 years ago by ▴ 970
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich PWMEnrich
updated 10.4 years ago by ▴ 80 • written 10.4 years ago by ▴ 970
0
votes
0
replies
780
views
Change chars ACGT to ACGU in seqLogo
seqLogo seqLogo
10.4 years ago Fabrice Tourre ▴ 970
0
votes
2
replies
3.1k
views
Using Biostring to make position frequency matrix
updated 10.4 years ago by ★ 6.8k • written 10.4 years ago by ▴ 970
0
votes
2
replies
3.6k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 970
0
votes
3
replies
4.6k
views
From location to get the SNP rs ID
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 970
0
votes
1
reply
1.0k
views
Annotated a snp list to find where these snp are located.
SNP annotate SNP annotate
updated 11.1 years ago by ★ 6.8k • written 11.1 years ago by ▴ 970
1
vote
3
replies
1.3k
views
VariantAnnotation package with snp location
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 11.2 years ago by ★ 4.2k • written 11.2 years ago by ▴ 970
0
votes
3
replies
976
views
VariantAnnotation: fine define Locating variants in and around genes
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 11.3 years ago by ★ 6.8k • written 11.3 years ago by ▴ 970
0
votes
1
reply
1.0k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP affy convert SNP affy convert
11.5 years ago Fabrice Tourre ▴ 970
0
votes
1
reply
1.4k
views
Illumina SNP array annotation
SNP SNP
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 970
0
votes
6
replies
1.4k
views
Error in makeTranscriptDbFromBiomart
updated 11.6 years ago by ★ 1.6k • written 11.6 years ago by ▴ 970
0
votes
1
reply
592
views
Recommend some R packages source code to read.
updated 12.0 years ago by 65k • written 12.0 years ago by ▴ 970
0
votes
4
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1.3k
views
Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
12.1 years ago Fabrice Tourre ▴ 970
0
votes
1
reply
728
views
Probe include snp in HG-U133_Plus_2
SNP probe SNP probe
updated 12.2 years ago by 65k • written 12.2 years ago by ▴ 970
0
votes
1
reply
1.6k
views
Has anyone successfully used sva packages?
limma sva limma sva
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 970
1
vote
0
replies
1.7k
views
sva remove batch effect.
sva sva
12.4 years ago Fabrice Tourre ▴ 970
0
votes
8
replies
4.3k
views
PCA to remove batch effect.
updated 12.4 years ago by ★ 2.0k • written 12.4 years ago by ▴ 970
2
votes
2
replies
3.2k
views
How to output Normalised count data from DESeq?
DESeq DESeq
updated 12.7 years ago by ▴ 810 • written 12.7 years ago by ▴ 970
0
votes
6
replies
1.4k
views
Where is DEXSeq bioconductor package?
DEXSeq DEXSeq
updated 12.8 years ago by ★ 3.7k • written 12.8 years ago by ▴ 970
0
votes
1
reply
949
views
GenomicFeatures more detail.
SNP annotate GenomicFeatures SNP annotate GenomicFeatures
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 970
0
votes
4
replies
3.5k
views
Get all 3'utr and 5'utr region from GenomicFeatures
GenomicFeatures GenomicFeatures
updated 13.0 years ago by 65k • written 13.0 years ago by ▴ 970
0
votes
2
replies
834
views
How to quikly know whether two genes are in the same pathway or not?
13.0 years ago Fabrice Tourre ▴ 970
1
vote
0
replies
1.1k
views
biomart Ensembl Regulatory Build
SNP Transcription biomaRt SNP Transcription biomaRt
13.0 years ago Fabrice Tourre ▴ 970
0
votes
1
reply
749
views
Chromosome: HSCHR17_1
biomaRt biomaRt
updated 13.0 years ago by ▴ 540 • written 13.0 years ago by ▴ 970
0
votes
1
reply
944
views
Human Exon array annotation problem.
Annotation affy xmapcore Annotation affy xmapcore
updated 13.0 years ago by ▴ 190 • written 13.0 years ago by ▴ 970
0
votes
11
replies
1.6k
views
Average based on group
updated 13.0 years ago by ▴ 260 • written 13.0 years ago by ▴ 970
0
votes
5
replies
3.5k
views
Fast way to find which gene a snp located.
SNP GenomicFeatures SNP GenomicFeatures
updated 13.0 years ago by ▴ 10 • written 13.0 years ago by ▴ 970
0
votes
0
replies
1.0k
views
snp anotation
SNP Annotation SNP Annotation
13.1 years ago Fabrice Tourre ▴ 970
0
votes
5
replies
1.9k
views
Calculate coverage on genome.
13.1 years ago Fabrice Tourre ▴ 970
0
votes
1
reply
912
views
Help for GOstats packages
Annotation GOstats Annotation GOstats
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 970
0
votes
0
replies
697
views
Packages for NimbleGen 385K CpG Island Plus Promoter Arrays?
13.3 years ago Fabrice Tourre ▴ 970
0
votes
1
reply
1.5k
views
limma, remove two type of batch effect
limma limma
updated 13.4 years ago by ★ 4.2k • written 13.4 years ago by ▴ 970
0
votes
3
replies
1.1k
views
Is there a place to download GenomicFeatures' sqlite from ensembl.
TranscriptDb TranscriptDb
updated 13.4 years ago by ★ 11k • written 13.4 years ago by ▴ 970
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