Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
1
reply
853
views
Answer: A: motifStack: how to make the start of motif logos have the same distance to the c
6.3 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
1.1k
views
Answer: A: Identification of Overrepresented Transcription Factor Binding Motifs in the Pro
6.3 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
962
views
Answer: A: Attempts to create a lolliplot from 1000 genomes .popvcf file using trackViewer
6.4 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
1.1k
views
Answer: A: ATACseqQC needs too much memory
6.4 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
1.5k
views
Answer: A: ChIPpeakAnno binOverGene error
6.4 years ago Ou, Jianhong ★ 1.3k
1
vote
1
reply
9.8k
views
Answer: A: How to change seqlevels in a GRanges object
6.8 years ago Ou, Jianhong ★ 1.3k
3
votes
1
reply
1.3k
views
Answer: A: Annotation Database for ChIPpeakAnno
6.9 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
978
views
Answer: A: trackviewer lolliplot pie.stack
6.9 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
3.8k
views
Answer: A: mm10 phastCons data for use with ATACseqQC
6.9 years ago Ou, Jianhong ★ 1.3k
2
votes
0
replies
7.4k
views
Comment: C: Error in GRanges: could not find symbol "recursive" in environment of the generi
7.1 years ago • updated 7.0 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
2.2k
views
Answer: A: RNAseq read coverage plot: What tool?
7.0 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
2.4k
views
Comment: C: ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is d
7.0 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
2.4k
views
Answer: A: ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is d
7.1 years ago Ou, Jianhong ★ 1.3k
2
votes
1
reply
3.3k
views
Answer: A: ChIPpeakAnno, MACS format annotation
7.1 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
883
views
Comment: C: question about summrizeOverlaps
7.2 years ago Ou, Jianhong ★ 1.3k
2
votes
2
replies
883
views
question about summrizeOverlaps
summarizeoverlaps
updated 7.2 years ago by 25k • written 7.2 years ago by ★ 1.3k
1
vote
0
replies
1.6k
views
Answer: A: ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
7.4 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
1.6k
views
Answer: A: ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
7.4 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
2.9k
views
Comment: C: ChIPpeakAnno-problem exporting data due to "arguments imply differing number of
7.4 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
2.9k
views
Answer: A: ChIPpeakAnno-problem exporting data due to "arguments imply differing number of
7.4 years ago Ou, Jianhong ★ 1.3k
3
votes
0
replies
1.6k
views
Answer: A: How to fix ChIPPeakAnno error in adding gene names to annotated peaks?
7.4 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
2.5k
views
Answer: A: problem to load data into ChIPpeakAnno
7.4 years ago Ou, Jianhong ★ 1.3k
1
vote
1
reply
3.5k
views
Comment: C: Error with ChIPpeakAnno Ensembl annotation
7.5 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
1.8k
views
Answer: A: Convert HOMER motif matrix to pfm?
7.7 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
1.5k
views
Answer: A: Plotting protein position weighted matrices in seqLogo and DiffLogo
7.8 years ago Ou, Jianhong ★ 1.3k
1
vote
1
reply
3.3k
views
Comment: C: nearest genes using TxDb.Hsapiens.UCSC.hg19
7.9 years ago Ou, Jianhong ★ 1.3k
2
votes
1
reply
8.4k
views
Answer: A: Find overlap for more than 2 GRanges object simultaneously (reproducible example
8.1 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
3.7k
views
Comment: C: ChIPpeakAnno: findOverlapsOfPeaks keep GRanges metadata
8.2 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
2.1k
views
Answer: A: motifStack crashes for example from documentation
8.2 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
1.7k
views
Comment: C: ChIPpeakAnno annotatePeakInBatch output
8.3 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
1.7k
views
Comment: C: ChIPpeakAnno annotatePeakInBatch output
8.3 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
1.7k
views
Comment: C: ChIPpeakAnno getAnnotation request fail
8.3 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
1.7k
views
Comment: C: ChIPpeakAnno getAnnotation request fail
8.3 years ago Ou, Jianhong ★ 1.3k
1
vote
1
reply
1.7k
views
Comment: C: ChIPpeakAnno getAnnotation request fail
8.3 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
5.7k
views
Comment: C: package ‘TCGAbiolinks’ is not available (for R version 3.2.0)
8.3 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
11k
views
Comment: C: annotate GRanges with upstream or downstream nearest gene
8.3 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
11k
views
Answer: A: annotate GRanges with upstream or downstream nearest gene
8.3 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
1.3k
views
Comment: C: ChIPpeakAnno (makeVennDiagram) giving different results than before
8.5 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
1.3k
views
Answer: A: ChIPpeakAnno (makeVennDiagram) giving different results than before
8.5 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
1.9k
views
Answer: A: ChIP-seq, peak annotation using ChIPpeakAnno
8.5 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
2.0k
views
Comment: C: Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
8.5 years ago Ou, Jianhong ★ 1.3k
1
vote
1
reply
2.0k
views
Answer: A: Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
8.5 years ago Ou, Jianhong ★ 1.3k
2
votes
0
replies
2.7k
views
Answer: A: org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
8.5 years ago Ou, Jianhong ★ 1.3k
2
votes
1
reply
2.6k
views
Answer: A: Assign genes to CpG islands
8.5 years ago Ou, Jianhong ★ 1.3k
1
vote
4
replies
1.9k
views
how to install Rsamtools in bioconductor/devel_base docker
docker Rsamtools
8.7 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
4.8k
views
Comment: C: annotatePeak() in ChIPseeker - how long does it take to run?
8.8 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
4.8k
views
Answer: A: annotatePeak() in ChIPseeker - how long does it take to run?
8.8 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
4.2k
views
Answer: A: How to annotate gene names for genomic coordinates?
8.8 years ago Ou, Jianhong ★ 1.3k
1
vote
0
replies
3.7k
views
Answer: A: ChIPpeakAnno: findOverlapsOfPeaks keep GRanges metadata
8.9 years ago Ou, Jianhong ★ 1.3k
0
votes
0
replies
3.7k
views
Comment: C: ChIPpeakAnno: findOverlapsOfPeaks keep GRanges metadata
9.0 years ago Ou, Jianhong ★ 1.3k
227 results • Page 3 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6