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5
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2.4k
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XCMS for LC-MS
xcms xcms
updated 11.9 years ago by ▴ 20 • written 11.9 years ago by ★ 13k
0
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1
reply
1.5k
views
calcNormFactors gives NaN normalization values- Please Help!
Normalization a4 Normalization a4
updated 11.9 years ago by ▴ 880 • written 11.9 years ago by ★ 13k
0
votes
1
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2.6k
views
Pairwise Alignment on Large Protein Sequence Data Set
Alignment genomes Alignment genomes
updated 11.9 years ago by 16k • written 11.9 years ago by ★ 13k
0
votes
1
reply
2.3k
views
package � pasilla� is not available (for R version 3.0.2)
updated 11.9 years ago by ▴ 180 • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.3k
views
calcNormFactors gives me NaN
RNASeq edgeR a4 RNASeq edgeR a4
updated 11.9 years ago by ★ 7.9k • written 11.9 years ago by ★ 13k
0
votes
3
replies
1.8k
views
Fitting linear model with different design matrix for each gene in limma
updated 11.9 years ago by ★ 7.9k • written 11.9 years ago by ★ 13k
0
votes
1
reply
2.4k
views
hoeffd function (CRAN HMisc package) use in arrayQualityMetrics
beadarray beadarray
updated 11.9 years ago by ★ 13k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.4k
views
topGO spurious GO terms?
Pathways GO topGO Pathways GO topGO
updated 11.9 years ago by ▴ 50 • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.3k
views
install pasilla
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ★ 13k
0
votes
1
reply
2.1k
views
install geneplotter
geneplotter geneplotter
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
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1
reply
1.9k
views
Answer: A: edgeR
11.9 years ago Guest User ★ 13k
0
votes
3
replies
3.6k
views
time series data edgeR?
edgeR edgeR
updated 11.9 years ago by ★ 7.9k • written 11.9 years ago by ★ 13k
0
votes
1
reply
920
views
edgeR question
edgeR edgeR
updated 11.9 years ago by ▴ 300 • written 12.0 years ago by ★ 13k
0
votes
4
replies
3.5k
views
Testing main effects and interactions in edgeR without contrasts
edgeR edgeR
updated 12.0 years ago by 53k • written 12.0 years ago by ★ 13k
0
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5
replies
2.0k
views
matchPattern vmatchPattern vectorised
BSgenome BSgenome BSgenome BSgenome
updated 12.0 years ago by ★ 13k • written 12.0 years ago by ★ 13k
2
votes
3
replies
3.1k
views
Package SomaticCancerAlterations, import own .maf file?
updated 12.0 years ago by ★ 1.3k • written 12.0 years ago by ★ 13k
1
vote
2
replies
9.2k
views
edgeR DGEList
updated 12.0 years ago by ▴ 880 • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Oryza sativa problem
Annotation convert Annotation convert
updated 12.0 years ago by ▴ 320 • written 12.0 years ago by ★ 13k
0
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0
replies
1.6k
views
OMICtools: An informative directory for HTS and array analysis
Microarray Microarray
12.0 years ago Guest User ★ 13k
0
votes
1
reply
800
views
DB PROBLEM
Oryza sativa Oryza sativa
updated 12.0 years ago by ▴ 320 • written 12.0 years ago by ★ 13k
0
votes
1
reply
3.0k
views
SPIA error - Error in density.default(pfstmp, bw = sd(pfstmp)/4) : \'bw\' is not positive.
SPIA cycle SPIA cycle
updated 12.0 years ago by ▴ 570 • written 12.0 years ago by ★ 13k
0
votes
5
replies
2.3k
views
Issue installing rhdf5 package on R-3.0.2
updated 12.0 years ago by ▴ 550 • written 12.0 years ago by ★ 13k
1
vote
2
replies
4.2k
views
How do I remove bad samples/probes before normalization and SWAN?
Normalization minfi Normalization minfi
updated 12.0 years ago by ★ 6.5k • written 12.0 years ago by ★ 13k
0
votes
0
replies
835
views
What software packages for Affymetrix HTA_2.0
Annotation probe Annotation probe
12.0 years ago Guest User ★ 13k
1
vote
2
replies
2.8k
views
Apply non-Gaussian distribution data to limma
limma convert limma convert
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.6k
views
DESeq(normalize using all samples?)
updated 12.0 years ago by 43k • written 12.0 years ago by ★ 13k
1
vote
1
reply
7.3k
views
DESeq2(analysis without replicate)
updated 12.0 years ago by 43k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.7k
views
prefiltering genelist before LIMMA & cut-off paramter for getting DEGs from topT object.
multtest multtest
updated 12.0 years ago by ★ 13k • written 12.0 years ago by ★ 13k
0
votes
4
replies
1.9k
views
affyPLM crashing R
affyPLM Harshlight affyPLM Harshlight
updated 12.0 years ago by ★ 13k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.6k
views
Install older version of Bioconductor
updated 12.0 years ago by 21k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.8k
views
Can gage not use large gene sets for pathway analysis?
Pathways gage pathview Pathways gage pathview
updated 12.0 years ago by ★ 1.6k • written 12.0 years ago by ★ 13k
0
votes
0
replies
1000
views
makeTranscriptDbFromGFF finished successfully or not?
12.0 years ago Guest User ★ 13k
0
votes
2
replies
4.4k
views
edgeR prior.count
edgeR edgeR
updated 12.0 years ago by 53k • written 12.0 years ago by ★ 13k
0
votes
3
replies
1.5k
views
SNPstats package bug report
snpStats snpStats
12.0 years ago Guest User ★ 13k
0
votes
1
reply
1.5k
views
Answer: A: SNPstats package bug report
12.0 years ago Guest User ★ 13k
0
votes
1
reply
870
views
DESeq problem
DESeq DESeq
updated 12.0 years ago by ▴ 540 • written 12.0 years ago by ★ 13k
0
votes
2
replies
2.6k
views
(adj.p.value & log2FC) or (B.value & log2FC)
limma limma
updated 12.0 years ago by 53k • written 12.0 years ago by ★ 13k
0
votes
1
reply
700
views
cooksCutoff error
DESeq2 DESeq2
updated 12.0 years ago by 43k • written 12.0 years ago by ★ 13k
0
votes
4
replies
1.0k
views
which genes to choose for being truly differentially expressed from a long list
limma limma
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
votes
1
reply
2.2k
views
Using a countDataSet as input data in DESeq2
easyRNASeq easyRNASeq
updated 12.0 years ago by 43k • written 12.0 years ago by ★ 13k
0
votes
0
replies
1.0k
views
Using \"model.matrix(~0 + as.factor(cancer), data=pheno)\" with \'sva\' package
12.0 years ago Guest User ★ 13k
0
votes
1
reply
4.0k
views
mulitfactorial analysis, adjusting for quantitative covariates
limma limma
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.3k
views
Separating gene filtering and multiple testing p-value adjustment steps
DESeq2 DESeq2
updated 12.0 years ago by ★ 13k • written 12.0 years ago by ★ 13k
1
vote
3
replies
1.8k
views
Metabolomic data analysis with papi / papiHtest() does not work as expected
Pathways PAPi Pathways PAPi
updated 12.0 years ago by ▴ 20 • written 12.0 years ago by ★ 13k
0
votes
4
replies
4.4k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
votes
1
reply
940
views
Limma with homemade chip, multiple probes per gene, no replicates?
updated 12.0 years ago by 53k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.8k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 12.0 years ago by ★ 1.2k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.6k
views
gage function---kegg.gsets
gage gage
updated 12.0 years ago by ★ 1.6k • written 12.0 years ago by ★ 13k
0
votes
2
replies
2.2k
views
question about design for limma time course, 2 conditions and drug treatment microarray experiment
Microarray DOSE Microarray DOSE
updated 12.0 years ago by ▴ 190 • written 12.0 years ago by ★ 13k
0
votes
1
reply
600
views
Finding similarities between multiple sequenced genomic libraries
updated 12.0 years ago by ★ 7.9k • written 12.0 years ago by ★ 13k
1,206 results • Page 9 of 25
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