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tri.counts.method parameter in deconstructSigs
deconstructsigs
updated 5.3 years ago by 0 • written 7.3 years ago by ▴ 90
0
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4
replies
1.3k
views
Gene clusters based on gene expression across samples
kmeans gene expression clustering
6.6 years ago • updated 6.5 years ago Jane Merlevede ▴ 90
0
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4
replies
6.5k
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Sample-to-sample distance matrix using heatmap.2
heatmap.2 gplots DESeq2
6.7 years ago Jane Merlevede ▴ 90
0
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7
replies
2.2k
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DESeq2 - experimental design with 2 variables
deseq2 multiple factor design
6.7 years ago Jane Merlevede ▴ 90
1
vote
4
replies
3.1k
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clusterProfiler - interpretation of enrichMap
clusterprofiler
updated 6.8 years ago by • 0 • written 7.5 years ago by ▴ 90
2
votes
4
replies
3.1k
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DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
6.8 years ago Jane Merlevede ▴ 90
2
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6
replies
3.8k
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DESeq2 minReplicatesForReplace with different group size
DESeq2
7.0 years ago Jane Merlevede ▴ 90
0
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0
replies
839
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ConsensusClusterPlus - Intrepretation of item & cluster consensus plots
ConsensusClusterPlus
7.4 years ago Jane Merlevede ▴ 90
0
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0
replies
1.3k
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ConsensusClusterPlus - add labels to plot
consensusclusterplus
7.4 years ago Jane Merlevede ▴ 90
1
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5
replies
2.7k
views
clusterProfiler - get symbol from GSEA results
clusterProfiler
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 90
3
votes
7
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4.5k
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clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplot
clusterProfiler
7.5 years ago Jane Merlevede ▴ 90
1
vote
2
replies
2.8k
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clusterProfiler - difference in the number of genes from input and enrichGO results
clusterProfiler
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 90
0
votes
2
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3.3k
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clusterProfiler - qvalue adjustment method in enricher()
clusterProfiler
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 90
0
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2
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2.4k
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clusterProfiler - interpretation of plotGOgraph
clusterprofiler topgo
7.5 years ago Jane Merlevede ▴ 90
0
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3
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7.5k
views
clusterProfiler - how does showCategory work in dotplot from compareClusterResult class?
clusterprofiler
7.5 years ago Jane Merlevede ▴ 90
1
vote
12
replies
1.4k
views
Help for defining design and contrasts of shRNA screen data
edgeR design and contrast matrix
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 90
2
votes
2
replies
1.9k
views
Analysis of shRNA screen data
shrna edger deseq2 differential expression normalized counts
7.8 years ago Jane Merlevede ▴ 90
1
vote
2
replies
1.4k
views
Common dispersion from estimateGLMRobustDisp()
edgeR dispersion
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 90
2
votes
6
replies
3.0k
views
Clustering and bootstrapping of RNASeq samples
clustering pvclust vsd edgeR rnaseq
written 8.0 years ago by ▴ 90
1
vote
6
replies
1.3k
views
Are these contrasts correct for use in DESeq2?
deseq2 contrast
updated 8.0 years ago by 42k • written 8.0 years ago by ▴ 90
5
votes
12
replies
4.8k
views
Differential expression analysis: comparison of DESeq2 and edgeR robust results
deseq2 edgeR differential gene expression
updated 8.0 years ago by ★ 28k • written 8.0 years ago by ▴ 90
6
votes
12
replies
5.1k
views
DESEq2 - Why is "my gene" not differentially expressed?
deseq2 differential gene expression
8.2 years ago Jane Merlevede ▴ 90
2
votes
8
replies
2.3k
views
Clustering RNASeq samples from different libraries using DESeq2
clustering DESeq2
8.2 years ago Jane Merlevede ▴ 90
0
votes
6
replies
1.6k
views
SomaticSignatures: Interpretation of plotSamples graphs
somaticsignatures
8.3 years ago • updated 8.2 years ago Jane Merlevede ▴ 90
0
votes
2
replies
1.1k
views
SomaticSignatures: properties of the estimated signatures
somaticsignatures
8.3 years ago Jane Merlevede ▴ 90
0
votes
4
replies
825
views
"reverse" a set of nucleotides: from reverse to direct sense
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ▴ 90
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