Showing : plotPCA • reset
2
votes
4
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943
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Plot PC1 and PC4 in plotPCA function
DESeq2 plotPCA
12 months ago • updated 10 months ago synat.keam • 0
3
votes
3
replies
1.9k
views
Adding sample label to PCA plot
plotpca DESeq2
12 months ago bjen731 ▴ 10
2
votes
2
replies
662
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA DESeq2 RUVSeq removebatcheffect()
21 months ago elizabethe819 • 0
1
vote
1
reply
436
views
No result from plotPCA()
DESeq2 RNASeq plotpca
updated 24 months ago by 39k • written 24 months ago by • 0
0
votes
3
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530
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Biplot environmental variables on top of PCA
deseq2 biplot plotpca
updated 3.0 years ago by 39k • written 3.0 years ago by • 0
0
votes
1
reply
429
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Comparisons between populations
deseq2 PlotPCA draw.triple.venn
updated 4.4 years ago by 39k • written 4.4 years ago by • 0
0
votes
1
reply
425
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PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2 plotpca
updated 4.4 years ago by 39k • written 4.4 years ago by • 0
12
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1
reply
5.6k
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identifying the samples on plotPCA
deseq2 plotpca PCa
updated 5.3 years ago by 39k • written 5.3 years ago by ▴ 70
0
votes
6
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1.9k
views
Different PCA plots using rlog and vsd on the same data set
deseq2 rlog variancestabilizingtransformation plotpca pca
5.4 years ago • updated 5.3 years ago lirongrossmann ▴ 70
2
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4
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2.4k
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DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
5.5 years ago Jane Merlevede ▴ 90
13
votes
5
replies
31k
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plotPCA - how to add labels to a PCA plot
plotPCA deseq2 labels
updated 6.1 years ago by ▴ 150 • written 6.1 years ago by ▴ 50
0
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0
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777
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group vectors around pca origins into 5 degrees arc cluster
pca plotpca
6.3 years ago marianarochadesouza • 0
0
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3
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1.1k
views
Trouble with Custom PC Plot
deseq2 plotPCA PCA rna-seq
6.7 years ago newsomew13 • 0
13 results • Page 1 of 1
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Replies
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the by swbarnes2 ★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs by stacy.genovese • 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs by James W. MacDonald 62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
Just so I don't make a mistake, do I just tell voomLmFit if a sample is a pool or a replicate independent of each group, or do I have to sp…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Awards • All
Scholar to James W. MacDonald 62k
Commentator to vs2001 ▴ 30
Scholar to Mike Smith ★ 5.9k
Popular Question to shepherl 3.4k
Scholar to Gordon Smyth 47k
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