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plotPCA
•
reset
0
votes
2
replies
817
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
12 months ago
yee
• 0
1
vote
5
replies
1.0k
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 14 months ago by
Michael Love
43k • written 14 months ago by
sara.jacobson
• 0
0
votes
3
replies
4.9k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 20 months ago by
hediatnani
• 0 • written 20 months ago by
Yijing
• 0
3
votes
5
replies
3.0k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
updated 6 months ago by
Daniele
• 0 • written 2.9 years ago by
synat.keam
• 0
3
votes
3
replies
8.5k
views
Adding sample label to PCA plot
plotpca
DESeq2
2.9 years ago
bjen731
▴ 10
2
votes
2
replies
1.7k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
3.6 years ago
elizabethe819
• 0
1
vote
1
reply
1.1k
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
s1760083
• 0
0
votes
3
replies
1.3k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
ecg1g15
▴ 30
0
votes
1
reply
786
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 6.2 years ago by
Michael Love
43k • written 6.3 years ago by
N. Perera
• 0
0
votes
1
reply
759
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 6.2 years ago by
Michael Love
43k • written 6.3 years ago by
snp31
• 0
12
votes
1
reply
7.8k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
3.6k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
7.2 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.4k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
7.4 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
45k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 7.9 years ago by
Federico Marini
▴ 180 • written 7.9 years ago by
al-ash
▴ 50
0
votes
0
replies
1.1k
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
8.2 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.7k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.5 years ago
newsomew13
• 0
16 results • Page
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Comment: Running multiple KNN queries in parallel
by
SamGG
▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel
by
Aaron Lun
★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output
by
Gordon Smyth
52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
by
Michael Love
43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
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