Showing : plotPCA • reset
2
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2
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How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA DESeq2 RUVSeq removebatcheffect()
14 days ago elizabethe819 • 0
1
vote
1
reply
105
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No result from plotPCA()
DESeq2 RNASeq plotpca
updated 3 months ago by 33k • written 3 months ago by • 0
0
votes
3
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123
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Biplot environmental variables on top of PCA
deseq2 biplot plotpca
updated 15 months ago by 33k • written 15 months ago by • 0
0
votes
1
reply
229
views
Comparisons between populations
deseq2 PlotPCA draw.triple.venn
updated 2.7 years ago by 33k • written 2.7 years ago by • 0
0
votes
1
reply
238
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PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2 plotpca
updated 2.7 years ago by 33k • written 2.7 years ago by • 0
11
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1
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3.2k
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identifying the samples on plotPCA
deseq2 plotpca PCa
updated 3.6 years ago by 33k • written 3.6 years ago by ▴ 60
0
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6
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991
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Different PCA plots using rlog and vsd on the same data set
deseq2 rlog variancestabilizingtransformation plotpca pca
3.6 years ago lirongrossmann ▴ 60
2
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4
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1.3k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
3.8 years ago Jane Merlevede ▴ 90
6
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5
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19k
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plotPCA - how to add labels to a PCA plot
plotPCA deseq2 labels
updated 4.4 years ago by ▴ 110 • written 4.4 years ago by ▴ 20
0
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0
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496
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group vectors around pca origins into 5 degrees arc cluster
pca plotpca
4.6 years ago marianarochadesouza • 0
0
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3
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826
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Trouble with Custom PC Plot
deseq2 plotPCA PCA rna-seq
5.0 years ago newsomew13 • 0
11 results • Page 1 of 1
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Comment: `aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size awa by Koki • 0
Ok, I got the gist of it. If I have the same situation of the previous case (https://support.bioconductor.org/p/9136736/), where I have to…
Answer: DESeq2 Design matrix by Michael Love 33k
Usually one would use a single design and extract comparisons. With a complex design, you should partner with someone familiar with linear …
Comment: `aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size awa by Hervé Pagès 14k
> For example, the following codes use a combination of delayed operation and block-processed operation but the code as a whole does not ex…
Answer: Technical reps by Michael Love 33k
I would go back and attempt to map but allowing a higher insert size. I think a number of RNA-seq alignment tools have this as an option. I…
Comment: ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted a by Emma ▴ 10
Hi Estefi, I tried to do the devel version install, but it requires R 4.1, which I don't have on my cluster. It's not possible for me to …
Votes
Comment: `aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size awa
Answer: Error: C stack usage of HDF5Array
Answer: "dim<-" against on-disk arrays
Answer: `aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size awa
Answer: ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted a
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