Showing : plotPCA • reset
1
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3
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159
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Adding sample label to PCA plot
plotpca DESeq2
21 days ago • updated 20 days ago bjen731 • 0
2
votes
2
replies
300
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How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA DESeq2 RUVSeq removebatcheffect()
8 months ago elizabethe819 • 0
1
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1
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224
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No result from plotPCA()
DESeq2 RNASeq plotpca
updated 12 months ago by 35k • written 12 months ago by • 0
0
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3
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248
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Biplot environmental variables on top of PCA
deseq2 biplot plotpca
updated 2.0 years ago by 35k • written 2.0 years ago by • 0
0
votes
1
reply
309
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Comparisons between populations
deseq2 PlotPCA draw.triple.venn
updated 3.4 years ago by 35k • written 3.4 years ago by • 0
0
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1
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315
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PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2 plotpca
updated 3.4 years ago by 35k • written 3.4 years ago by • 0
11
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1
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4.2k
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identifying the samples on plotPCA
deseq2 plotpca PCa
updated 4.3 years ago by 35k • written 4.3 years ago by ▴ 60
0
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6
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1.3k
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Different PCA plots using rlog and vsd on the same data set
deseq2 rlog variancestabilizingtransformation plotpca pca
4.3 years ago lirongrossmann ▴ 60
2
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4
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1.6k
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DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
4.5 years ago Jane Merlevede ▴ 90
12
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5
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23k
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plotPCA - how to add labels to a PCA plot
plotPCA deseq2 labels
updated 5.1 years ago by ▴ 130 • written 5.1 years ago by ▴ 50
0
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0
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583
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group vectors around pca origins into 5 degrees arc cluster
pca plotpca
5.3 years ago marianarochadesouza • 0
0
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3
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945
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Trouble with Custom PC Plot
deseq2 plotPCA PCA rna-seq
5.7 years ago newsomew13 • 0
12 results • Page 1 of 1
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Comment: fgsea not downloading due to new r version. Is there a way around this? by amir.khan • 0
Seems to have done the trick and worked. thanks!
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Michael Love 35k
Just to underscore swbarnes2 advice above, I'd also recommend discussing statistical design with a local statistician or someone familiar w…
Answer: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
First, I'd start by looking at all your samples in PCA. Does sex have a strong effect? Does it make sense to compare one tissue with anot…
Comment: Unable to install Rhtslib in R-4.1.1 by cf2209 • 0
Thank you for your input I appreciate it. I will revise and make changes to this post as you suggested. Unfortunately I am not able to do t…
Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by Rory Stark ★ 4.3k
I'm copying this over now, but have a couple of questions: 1. Did you create a `ScanBamParam`object, set `isUnmappedQuery`, and store it …
Votes
Answer: fgsea not downloading due to new r version. Is there a way around this?
Comment: Unable to install Rhtslib in R-4.1.1
Answer: fgsea not downloading due to new r version. Is there a way around this?
Answer: Swish with more than two conditions. Add support for contrasts?
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
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