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Showing :
plotPCA
•
reset
2
votes
4
replies
943
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
12 months ago • updated 10 months ago
synat.keam
• 0
3
votes
3
replies
1.9k
views
Adding sample label to PCA plot
plotpca
DESeq2
12 months ago
bjen731
▴ 10
2
votes
2
replies
662
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
21 months ago
elizabethe819
• 0
1
vote
1
reply
436
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 24 months ago by
Michael Love
39k • written 24 months ago by
s1760083
• 0
0
votes
3
replies
530
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 3.0 years ago by
Michael Love
39k • written 3.0 years ago by
ecg1g15
• 0
0
votes
1
reply
429
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 4.4 years ago by
Michael Love
39k • written 4.4 years ago by
N. Perera
• 0
0
votes
1
reply
425
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 4.4 years ago by
Michael Love
39k • written 4.4 years ago by
snp31
• 0
12
votes
1
reply
5.6k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 5.3 years ago by
Michael Love
39k • written 5.3 years ago by
lirongrossmann
▴ 70
0
votes
6
replies
1.9k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
5.4 years ago • updated 5.3 years ago
lirongrossmann
▴ 70
2
votes
4
replies
2.4k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
5.5 years ago
Jane Merlevede
▴ 90
13
votes
5
replies
31k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 6.1 years ago by
Federico Marini
▴ 150 • written 6.1 years ago by
al-ash
▴ 50
0
votes
0
replies
777
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
6.3 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.1k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
6.7 years ago
newsomew13
• 0
13 results • Page
1 of 1
Recent ...
Replies
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
by
swbarnes2
★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs
by
stacy.genovese
• 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs
by
James W. MacDonald
62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Just so I don't make a mistake, do I just tell voomLmFit if a sample is a pool or a replicate independent of each group, or do I have to sp…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Awards
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James W. MacDonald
62k
Commentator
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vs2001
▴ 30
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Mike Smith
★ 5.9k
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shepherl
3.4k
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Gordon Smyth
47k
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