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plotPCA
•
reset
0
votes
2
replies
549
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
8 months ago • updated 7 months ago
yee
• 0
1
vote
5
replies
802
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 9 months ago by
Michael Love
42k • written 9 months ago by
sara.jacobson
• 0
0
votes
3
replies
3.8k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 15 months ago by
hediatnani
• 0 • written 16 months ago by
Yijing
• 0
3
votes
5
replies
2.7k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
updated 7 weeks ago by
Daniele
• 0 • written 2.5 years ago by
synat.keam
• 0
3
votes
3
replies
7.2k
views
Adding sample label to PCA plot
plotpca
DESeq2
2.6 years ago • updated 2.5 years ago
bjen731
▴ 10
2
votes
2
replies
1.5k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
3.2 years ago
elizabethe819
• 0
1
vote
1
reply
965
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 3.5 years ago by
Michael Love
42k • written 3.5 years ago by
s1760083
• 0
0
votes
3
replies
1.1k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
ecg1g15
▴ 20
0
votes
1
reply
689
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
N. Perera
• 0
0
votes
1
reply
679
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
snp31
• 0
12
votes
1
reply
7.4k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 6.8 years ago by
Michael Love
42k • written 6.8 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
3.4k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
6.8 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.2k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
7.0 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
43k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 7.6 years ago by
Federico Marini
▴ 180 • written 7.6 years ago by
al-ash
▴ 50
0
votes
0
replies
1.0k
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
7.8 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.6k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.2 years ago
newsomew13
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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