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Answer: A: Differential Expression analysis between distinct scRNA-seq datasets
7.2 years ago davide risso ▴ 980
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Comment: C: Batch effects between controls
7.2 years ago davide risso ▴ 980
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Answer: A: Batch effects between controls
7.2 years ago davide risso ▴ 980
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Comment: C: RNA Seq analysis vs. Single cell RNA seq analysis
7.3 years ago davide risso ▴ 980
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Answer: A: How to use RUVSeq in clustering problems?
7.3 years ago davide risso ▴ 980
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Comment: C: Zero inflation in RUV normalization and DE for single cell data
7.4 years ago davide risso ▴ 980
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Comment: C: Zero inflation in RUV normalization and DE for single cell data
7.4 years ago davide risso ▴ 980
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Comment: C: Zero inflation in RUV normalization and DE for single cell data
7.4 years ago davide risso ▴ 980
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Answer: A: RUVseq: How to implement to more complex time-course model?
7.4 years ago davide risso ▴ 980
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Answer: A: Zero inflation in RUV normalization and DE for single cell data
7.4 years ago davide risso ▴ 980
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2.7k
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Answer: A: Does it make sense to consider RUVr normalization for single cell RNA analysis?
7.5 years ago davide risso ▴ 980
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Comment: C: What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
7.6 years ago davide risso ▴ 980
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Answer: A: RNAseq Analysis using RUVs
7.6 years ago davide risso ▴ 980
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Answer: A: Decide normalisation method in RUVseq for RNAseq data
7.6 years ago davide risso ▴ 980
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Comment: C: BiocParallel::bplapply() performance with MulticoreParam() is worse than mclappl
7.6 years ago davide risso ▴ 980
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BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel parallel
7.6 years ago davide risso ▴ 980
3
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Answer: A: Fundamental questions about DESeq2 and RUVs in targeted gene set of 500
7.7 years ago davide risso ▴ 980
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2.4k
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Answer: A: How to determine a set of empirical control 'genes' using RUVSeq
7.9 years ago davide risso ▴ 980
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Answer: A: Can FPKM or TPM values be used as RUVs input ?
8.0 years ago davide risso ▴ 980
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Answer: A: Appropriate to apply RUVSeq to exon bin counts for DEXSeq?
8.0 years ago davide risso ▴ 980
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Answer: A: Raw read count Vs EdgeR normzlized read count for RUVg normalization
8.2 years ago davide risso ▴ 980
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Answer: A: Fisher exact test
8.3 years ago davide risso ▴ 980
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Comment: C: Can Normalized cpm values be used as RUVs input
8.4 years ago davide risso ▴ 980
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1.9k
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Comment: C: Can Normalized cpm values be used as RUVs input
8.4 years ago davide risso ▴ 980
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Answer: A: Can Normalized cpm values be used as RUVs input
8.4 years ago davide risso ▴ 980
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Answer: A: How to use RUVseq with voom-limma for differential expression analysis?
8.4 years ago davide risso ▴ 980
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3.5k
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Comment: C: How to use RUVseq with voom-limma for differential expression analysis?
8.4 years ago davide risso ▴ 980
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8.2k
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Comment: C: Normalised counts from RUVg in RUVSeq
8.5 years ago davide risso ▴ 980
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8.2k
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Comment: C: Normalised counts from RUVg in RUVSeq
8.5 years ago davide risso ▴ 980
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8.2k
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Comment: C: Normalised counts from RUVg in RUVSeq
8.5 years ago davide risso ▴ 980
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8.2k
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Comment: C: Normalised counts from RUVg in RUVSeq
8.5 years ago davide risso ▴ 980
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2.7k
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Comment: C: RUVseq control genes - invalid subscript type 'list'
8.5 years ago davide risso ▴ 980
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2.7k
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Answer: A: RUVseq control genes - invalid subscript type 'list'
8.5 years ago davide risso ▴ 980
2
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Answer: A: RUVSeq empirical negative controls? how many to take to find the span set
8.5 years ago davide risso ▴ 980
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3.4k
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Comment: C: RUVSeq DE analysis for data with replicate samples and 4 conditions
8.6 years ago davide risso ▴ 980
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1.2k
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Answer: A: RUVSeq and Generalised Linear Mixed Model
8.6 years ago davide risso ▴ 980
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1.8k
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Answer: A: Error trying to load counts matrix and lane information using "newSeqExpressionS
8.6 years ago davide risso ▴ 980
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Comment: C: How is the mean-variance plot calculated?
8.7 years ago davide risso ▴ 980
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1.8k
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Comment: C: effect of polyploidy level on RUVs normalisation
8.7 years ago davide risso ▴ 980
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1.8k
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Comment: C: effect of polyploidy level on RUVs normalisation
8.7 years ago davide risso ▴ 980
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1.8k
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Answer: A: effect of polyploidy level on RUVs normalisation
8.7 years ago davide risso ▴ 980
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3.0k
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Comment: C: Removing unwanted variation (RUV) for paired analysis ?
8.9 years ago davide risso ▴ 980
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5.5k
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Comment: C: DESeq2 results with RUVSeq values
9.0 years ago davide risso ▴ 980
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1.9k
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Answer: A: RUVSeq installation problems
9.0 years ago davide risso ▴ 980
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7
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2.8k
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Workflows in BioC 3.2
workflows installation biocinstaller
updated 9.0 years ago by • 0 • written 9.2 years ago by ▴ 980
1
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Comment: C: RUVseq design matrix for first pass of edger
9.1 years ago davide risso ▴ 980
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2.1k
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Answer: A: RUVseq design matrix for first pass of edger
9.1 years ago davide risso ▴ 980
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4.4k
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Comment: C: Number of co-variables k in RUVSeq (RUVr)
9.1 years ago davide risso ▴ 980
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Answer: A: Number of co-variables k in RUVSeq (RUVr)
9.1 years ago davide risso ▴ 980
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2.6k
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Answer: A: RUVseq using RUVg most non-differential expressed genes
9.1 years ago davide risso ▴ 980
132 results • Page 2 of 3
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