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biocinstaller
•
reset
0
votes
5
replies
3.2k
views
Cannot install clusterProfiler
clusterprofiler
biocinstaller
updated 5 months ago by
thkapell
▴ 10 • written 4.0 years ago by
dtatarak
• 0
1
vote
3
replies
414
views
Error by installing BiocManager
BiocInstaller
BiocManager
Bioconductor
16 months ago
adklts
• 0
1
vote
2
replies
1.0k
views
Rsubread package not available?
Rsubread
BiocInstaller
updated 2.7 years ago by
Gordon Smyth
45k • written 10.5 years ago by
Noah Dowell
▴ 410
0
votes
3
replies
682
views
biocLite() wants to update current packages
BiocInstaller
updated 3.0 years ago by
shepherl
3.1k • written 3.0 years ago by
lghunsicker
• 0
0
votes
3
replies
509
views
Troubles with mzR and BiocInstaller
mzr rcpp
biocinstaller
3.4 years ago
petr.hasler
• 0
1
vote
6
replies
1.7k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran
biocinstaller
biocmanager
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Kevin Ushey
▴ 130
0
votes
2
replies
3.5k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller
custom library path
installation
package installation
updated 3.7 years ago by
James W. MacDonald
59k • written 3.7 years ago by
ariel
▴ 10
5
votes
5
replies
1.3k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite
package installation
withr
biocinstaller
rhtslib
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
merv
▴ 60
0
votes
1
reply
987
views
R says include dir is empty, but it's not.
R
bioconductor
biocinstaller
package installation
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
ariel
▴ 10
1
vote
2
replies
577
views
cannot find function even though KEGGgraph package supposedly installed
kegggraph
biocinstaller
updated 3.8 years ago by
Mike Smith
★ 5.5k • written 3.8 years ago by
kathleenfix
▴ 10
1
vote
1
reply
561
views
Installing DESeq2 error: missing value where TRUE/FALSE needed
deseq2
error
biocinstaller
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
dfhannum
▴ 10
1
vote
3
replies
874
views
Trouble installing BiocInstaller
biocinstaller
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
2299639P
▴ 10
3
votes
2
replies
1.1k
views
Unable to install a Bioconductor package to local directory
error
biocinstaller
updated 4.0 years ago by
James W. MacDonald
59k • written 4.0 years ago by
tagirdzh
• 0
0
votes
6
replies
962
views
Illumina Methylation Manifest Install
Install
biocinstaller
package installation
4.0 years ago
julieumn
• 0
0
votes
1
reply
622
views
installation of Biocunductor packages in My home directory.
biocinstaller
package installation
installr
4.1 years ago
vinod.acear
▴ 50
0
votes
1
reply
976
views
Issue installing packages ATACseqQC and GO.db
GO.db
biocinstaller
package installation
atacseqqc
updated 4.2 years ago by
Ou, Jianhong
★ 1.3k • written 4.2 years ago by
n.pantelireis16
• 0
1
vote
1
reply
2.5k
views
Cannot use Bioconductor with new conda R installation?
bioconductor
biocinstaller
installation
conda
4.2 years ago
jol.espinoz
▴ 40
2
votes
2
replies
864
views
BiomaRT URLs down? 404 Not Found
biomart
bioconductor
support.bioconductor.org
biocinstaller
install
4.3 years ago
n.pantelireis16
• 0
0
votes
2
replies
611
views
Predefine default siteRepos for biocLite
biocinstaller
bioclite
4.5 years ago
Martin Marcher
• 0
2
votes
7
replies
2.7k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor
biocinstaller
package installation
4.5 years ago
martyferr90
▴ 20
0
votes
2
replies
2.3k
views
Problem using biocLite() to update packages
biocLite
BiocInstaller
variantannotation
updated 4.5 years ago by
James W. MacDonald
59k • written 4.5 years ago by
Jenny Drnevich
★ 2.0k
1
vote
0
replies
622
views
Reinstalling failing - Check packages for root user, too
biocinstaller
root
installation
installation problem
4.6 years ago
charles.tilford
▴ 10
8
votes
5
replies
1.4k
views
Trouble installing bioconductor
biocinstaller
installation
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
will.b.porterfield
▴ 50
0
votes
2
replies
5.4k
views
Unable to install any bioconductor packages
R
biocinstaller
bioclite
package installation
4.8 years ago
sebastien200109
• 0
0
votes
3
replies
1.4k
views
Bioconductor installation problem (MacOSX El-Capitan)
biocinstaller
5.0 years ago
zhanxw
• 0
1
vote
3
replies
813
views
Bioconductor Software download
biocinstaller
bioconductor
download
5.1 years ago
s.munster
▴ 40
2
votes
2
replies
1.3k
views
BioC and genevisR and maftools
genevisr
maftools
bioconductor
biocinstaller
5.3 years ago
Bogdan
▴ 640
0
votes
4
replies
976
views
BiocInstaller fails to load with older R within a 'suppressMessages()' context
biocinstaller
updated 5.5 years ago by
Martin Morgan
25k • written 5.6 years ago by
Kevin Ushey
▴ 130
0
votes
7
replies
2.4k
views
BiocInstaller wants version of R that is not available yet
bioconductor
error
biocinstaller
package installation
install
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
matt.s.leslie
• 0
0
votes
5
replies
2.9k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
jol.espinoz
▴ 40
3
votes
1
reply
1.0k
views
Offline loading of BiocInstaller or depending packages and connection timeout
BiocInstaller
affy
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
akaever
▴ 30
1
vote
5
replies
919
views
Making package compatible with old version of R/Bioconductor
bioconductor
R
software error
biocinstaller
5.9 years ago
gabriel.hoffman
▴ 90
0
votes
1
reply
835
views
help installing bioconductor workflows
workflows
biocinstaller
error
6.0 years ago
rocknrollscience
• 0
1
vote
1
reply
1.2k
views
RUVSeq installation problems
RUVSeq
bioconductor
biocinstaller
updated 6.3 years ago by
davide risso
▴ 890 • written 6.3 years ago by
plinsley
• 0
3
votes
7
replies
1.8k
views
Workflows in BioC 3.2
workflows
installation
biocinstaller
updated 6.3 years ago by
angela.oliveira.pisco
• 0 • written 6.6 years ago by
davide risso
▴ 890
1
vote
11
replies
3.6k
views
Error when install ggbio
ggbio
biocinstaller
updated 6.3 years ago by
David Rasp
• 0 • written 6.4 years ago by
syrttgump
▴ 20
0
votes
2
replies
1.2k
views
Package installation errors for Bioconductor and easyRNASeq
installation
biocinstaller
easyrnaseq
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
michael.dhar
• 0
0
votes
1
reply
881
views
Upgrading bioconductor - how do I change the contrib.url?
biocinstaller
biocupgrade
updated 6.5 years ago by
James W. MacDonald
59k • written 6.5 years ago by
ail27
• 0
1
vote
14
replies
9.6k
views
Unable to connect from R 3.2.2
biocinstaller
source
6.5 years ago
michel.renou
• 0
0
votes
0
replies
1.4k
views
Problem installing latest Bioconductor version
biocinstaller
software error
6.6 years ago
vassily
• 0
0
votes
4
replies
5.5k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller
bioclite
updated 6.6 years ago by
Dan Tenenbaum
★ 8.2k • written 6.6 years ago by
Stephanie M. Gogarten
▴ 820
0
votes
20
replies
11k
views
BiocInstaller’ is not available (for R version 3.2.2)
biocinstaller
6.7 years ago
anikumar.murugan
• 0
0
votes
2
replies
3.7k
views
biocLite() upgrade issue when same package in 2 libraries
biocinstaller
6.8 years ago
Jenny Drnevich
★ 2.0k
1
vote
5
replies
2.1k
views
bioclite lib.loc and R_LIBS_USER
biocinstaller
6.8 years ago
Janet Young
▴ 740
1
vote
1
reply
4.6k
views
Problems installing S4Vectors using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.2.1.
install
installation
biocinstaller
6.9 years ago
tresch
• 0
2
votes
9
replies
1.2k
views
broken download for source tarball of BiocInstaller 1.16.3
download
biocinstaller
6.9 years ago
kenneth.hoste
▴ 20
0
votes
2
replies
2.6k
views
Loading BiocInstaller fails when affy is loaded
biocinstaller
updated 7.0 years ago by
James W. MacDonald
59k • written 7.0 years ago by
Jeremy Ng
▴ 180
0
votes
1
reply
1.5k
views
package ‘Ruuid’ is not available (as a binary package for R version 3.1.3)
ruuid
biocinstaller
updated 7.0 years ago by
Steve Lianoglou
13k • written 7.0 years ago by
sharon.warner56
• 0
3
votes
11
replies
5.5k
views
Problems getting Bioc 3.1 after upgrade to R_3.2.0
biocinstaller
r update
7.0 years ago
meeta.mistry
▴ 20
2
votes
2
replies
3.4k
views
Help with installing biocLite.R
biocLite
biocinstaller
7.1 years ago
thomas.mohr
▴ 20
50 results • Page
1 of 1
Recent ...
Replies
Comment: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
by
Yang Shi
• 0
Perfect answer! This questions troubled me for a long time. Thanks again and for your quick and detailed reply.
Comment: HTSeq Counts no longer available
by
swbarnes2
★ 1.0k
STAR's output was intended to mimic HTseq-counts.
Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
by
James W. MacDonald
59k
In the previous post I noted that `paCalls` doesn't exist for this array, and that is still true today. And there are no methods similar to…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
Rory Stark
★ 4.4k
Could you let me know the versions? Output of `sessionInfo()`.
Comment: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
by
Yang Shi
• 0
okay sir, the new post is here (https://support.bioconductor.org/p/9144266/). Looking forward to your reply.
Votes
Answer: Use MulticoreParam under BatchtoolsParam
Answer: Variance explained (coefficient of determination) in edgeR
HTSeq Counts no longer available
Comment: Problem converting transcript to genomic coordinates with Annotation Hub
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
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