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Answer: Answer: Biomart and ensembl not working?
10 weeks ago James W. MacDonald 68k
0
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164
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Answer: Answer: Unknown gene transcripts after annotatr
10 weeks ago James W. MacDonald 68k
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0
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504
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Answer: Answer: DESeq2 Heatmap
10 weeks ago James W. MacDonald 68k
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164
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Answer: Answer: Improve performance of qusage aggregateGeneSet
10 weeks ago James W. MacDonald 68k
0
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140
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Answer: Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
10 weeks ago James W. MacDonald 68k
0
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496
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Comment: Comment: iam not able to do retrive data using GEOquery R package
10 weeks ago James W. MacDonald 68k
0
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496
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Answer: Answer: iam not able to do retrive data using GEOquery R package
10 weeks ago James W. MacDonald 68k
0
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0
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912
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
10 weeks ago James W. MacDonald 68k
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232
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Answer: Answer: Installation error for Rsamtools.
10 weeks ago James W. MacDonald 68k
0
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0
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912
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
10 weeks ago James W. MacDonald 68k
1
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1
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912
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Answer: Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
10 weeks ago James W. MacDonald 68k
0
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1.1k
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Comment: Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
11 weeks ago James W. MacDonald 68k
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0
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1.1k
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Comment: Comment: Deseq2, enrichGO and ensembl ID
11 weeks ago James W. MacDonald 68k
0
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1
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1.1k
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Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
11 weeks ago James W. MacDonald 68k
0
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1
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336
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Comment: Comment: Newbie Question - adding metadata to an analysis
11 weeks ago James W. MacDonald 68k
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379
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Answer: Answer: Diffbind interpretation of data - fold change
11 weeks ago James W. MacDonald 68k
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248
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Answer: Answer: No preprocessing allowed for EPICv2 with DMRcate
11 weeks ago James W. MacDonald 68k
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687
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Comment: Comment: How do I fix an odd voom plot in a combined dataset?
11 weeks ago James W. MacDonald 68k
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1
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336
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Answer: Answer: Newbie Question - adding metadata to an analysis
11 weeks ago James W. MacDonald 68k
0
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357
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Comment: Comment: MissMethyl failed to use gometh function for EPICv2
11 weeks ago James W. MacDonald 68k
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1
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357
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Answer: Answer: MissMethyl failed to use gometh function for EPICv2
11 weeks ago James W. MacDonald 68k
0
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0
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977
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
3 months ago James W. MacDonald 68k
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1
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977
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
3 months ago James W. MacDonald 68k
1
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1
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2.2k
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Comment: Comment: nightmare to make custom txdb for genomes from ToxoDB
3 months ago James W. MacDonald 68k
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1
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2.2k
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Answer: Answer: nightmare to make custom txdb for genomes from ToxoDB
3 months ago James W. MacDonald 68k
0
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0
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680
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Comment: Comment: Deseq2 Design
3 months ago James W. MacDonald 68k
0
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0
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377
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Answer: Answer: Build error on kunpeng2 Linux aarch64
3 months ago James W. MacDonald 68k
0
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0
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2.2k
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Comment: Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
3 months ago James W. MacDonald 68k
0
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1
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680
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Comment: Comment: Deseq2 Design
3 months ago James W. MacDonald 68k
0
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0
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698
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Comment: Comment: Help using rtracklayer for gene ID extraction
3 months ago James W. MacDonald 68k
1
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1
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680
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Answer: Answer: Deseq2 Design
3 months ago James W. MacDonald 68k
0
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0
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963
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Answer: Answer: Cannot install GO.db and org.Hs.eg.db
3 months ago James W. MacDonald 68k
0
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2
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697
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Answer: Answer: p value is 0, padj is 0
3 months ago James W. MacDonald 68k
0
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1
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698
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Answer: Answer: Help using rtracklayer for gene ID extraction
3 months ago James W. MacDonald 68k
0
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0
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518
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Comment: Comment: DESeq2 - Comparing Comparisons
3 months ago James W. MacDonald 68k
1
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1
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584
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Comment: Comment: Can we get beta values with DMRcate package
3 months ago James W. MacDonald 68k
1
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1
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584
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Answer: Answer: Can we get beta values with DMRcate package
3 months ago James W. MacDonald 68k
0
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1
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310
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Answer: Answer: git push errors
3 months ago James W. MacDonald 68k
1
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0
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1.4k
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Comment: Comment: How to annotate a limma Elist raw class object with an annotation file
3 months ago James W. MacDonald 68k
0
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0
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1.1k
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Comment: Comment: Differential Expression Genes as Independent Variables
3 months ago James W. MacDonald 68k
0
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1
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518
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Answer: Answer: DESeq2 - Comparing Comparisons
3 months ago James W. MacDonald 68k
0
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1
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1.1k
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Comment: Comment: Differential Expression Genes as Independent Variables
3 months ago James W. MacDonald 68k
0
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0
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1.4k
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Answer: Answer: How to annotate a limma Elist raw class object with an annotation file
3 months ago James W. MacDonald 68k
0
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1
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330
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Answer: Answer: DESeq2 sizefactors counfounded with biological treatment
3 months ago James W. MacDonald 68k
2
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0
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418
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Answer: Answer: bioconductor packages on bioconda
4 months ago James W. MacDonald 68k
0
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1
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402
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Answer: Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
4 months ago James W. MacDonald 68k
1
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1
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399
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Answer: Answer: Epic v2 Annotation CpG_maf source?
4 months ago James W. MacDonald 68k
0
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0
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641
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Comment: Comment: Deseq2 res Function
4 months ago James W. MacDonald 68k
1
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1
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531
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Answer: Answer: Struggle with the replicates of epic array data
4 months ago James W. MacDonald 68k
0
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1
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538
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Comment: Comment: Help with RSEM counts: do I transpose matrix?
4 months ago James W. MacDonald 68k
8,771 results • Page 2 of 176
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