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Comment:
Comment: How should I handle read counts derived from SGSeq when they were passed to limm
3 months ago
Sara
• 0
0
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0
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1.2k
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Comment:
Comment: Custom gene annotations for SGSeq
4 months ago
Sara
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0
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2
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617
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How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
DESeq2
single-cell
scRNA
Pseudobulk
updated 6 months ago by
Guido Hooiveld
★ 4.1k • written 6 months ago by
Sara
• 0
0
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0
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2.4k
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Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
7 months ago
Sara
• 0
2
votes
1
reply
423
views
How to design DEXSeq formula for multiple variables
DEXSeq
7 months ago • updated 6 months ago
Sara
• 0
0
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1
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2.4k
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Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
7 months ago
Sara
• 0
3
votes
1
reply
479
views
How to save the DEXSeq results
DEXSeq
updated 7 months ago by
Michael Love
43k • written 7 months ago by
Sara
• 0
0
votes
1
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2.4k
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Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
7 months ago
Sara
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0
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0
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2.4k
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Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
7 months ago
Sara
• 0
0
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0
replies
294
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
7 months ago
Sara
• 0
1
vote
1
reply
364
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 8 months ago by
kamryncole1963
• 0 • written 8 months ago by
Sara
• 0
0
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1
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2.1k
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Comment:
Comment: removing the batch effect for vst counts and defining the batches in removeBatch
16 months ago
Sara
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0
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0
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2.1k
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Comment:
Comment: removing the batch effect for vst counts and defining the batches in removeBatch
16 months ago
Sara
• 0
2
votes
5
replies
2.1k
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removing the batch effect for vst counts and defining the batches in removeBatchEffect function
DESeq2
BatchEffect
limma
updated 16 months ago by
Gordon Smyth
52k • written 16 months ago by
Sara
• 0
0
votes
1
reply
765
views
really low padj value from DESeq2
DESeq2
updated 17 months ago by
ATpoint
★ 4.6k • written 17 months ago by
Sara
• 0
0
votes
1
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55k
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Comment:
Comment: deseq2 filter the low counts
18 months ago
Sara
• 0
0
votes
1
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55k
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Comment:
Comment: deseq2 filter the low counts
18 months ago
Sara
• 0
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