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456
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pairedGSEA input files
pairedGSEA
updated 7 months ago by
shdam
▴ 10 • written 8 months ago by
Sara
• 0
0
votes
1
reply
857
views
How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differential Gene Expression analysis in scRNA-seq?
SingleCellData
DESeq2
pseudobulk
sing
updated 8 months ago by
James W. MacDonald
68k • written 8 months ago by
Sara
• 0
0
votes
0
replies
1.9k
views
Comment:
Comment: How should I handle read counts derived from SGSeq when they were passed to limm
14 months ago
Sara
• 0
0
votes
0
replies
1.5k
views
Comment:
Comment: Custom gene annotations for SGSeq
15 months ago
Sara
• 0
0
votes
2
replies
1.2k
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
DESeq2
single-cell
scRNA
Pseudobulk
updated 17 months ago by
Guido Hooiveld
★ 4.1k • written 17 months ago by
Sara
• 0
0
votes
0
replies
3.1k
views
Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
17 months ago
Sara
• 0
2
votes
1
reply
778
views
How to design DEXSeq formula for multiple variables
DEXSeq
18 months ago • updated 17 months ago
Sara
• 0
0
votes
1
reply
3.1k
views
Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
18 months ago
Sara
• 0
3
votes
1
reply
858
views
How to save the DEXSeq results
DEXSeq
updated 18 months ago by
Michael Love
43k • written 18 months ago by
Sara
• 0
0
votes
1
reply
3.1k
views
Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
18 months ago
Sara
• 0
0
votes
0
replies
3.1k
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Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
18 months ago
Sara
• 0
0
votes
0
replies
535
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
18 months ago
Sara
• 0
1
vote
1
reply
661
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 19 months ago by
kamryncole1963
• 0 • written 19 months ago by
Sara
• 0
0
votes
1
reply
2.8k
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Comment:
Comment: removing the batch effect for vst counts and defining the batches in removeBatch
2.3 years ago
Sara
• 0
0
votes
0
replies
2.8k
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Comment:
Comment: removing the batch effect for vst counts and defining the batches in removeBatch
2.3 years ago
Sara
• 0
2
votes
5
replies
2.8k
views
removing the batch effect for vst counts and defining the batches in removeBatchEffect function
DESeq2
BatchEffect
limma
updated 2.2 years ago by
Gordon Smyth
53k • written 2.3 years ago by
Sara
• 0
0
votes
1
reply
1.2k
views
really low padj value from DESeq2
DESeq2
updated 2.4 years ago by
ATpoint
★ 5.0k • written 2.4 years ago by
Sara
• 0
0
votes
1
reply
62k
views
Comment:
Comment: deseq2 filter the low counts
2.4 years ago
Sara
• 0
0
votes
1
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62k
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Comment:
Comment: deseq2 filter the low counts
2.4 years ago
Sara
• 0
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