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2
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389
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pairedGSEA input files
pairedGSEA
updated 5 months ago by
shdam
▴ 10 • written 6 months ago by
Sara
• 0
0
votes
1
reply
747
views
How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differential Gene Expression analysis in scRNA-seq?
SingleCellData
DESeq2
pseudobulk
sing
updated 6 months ago by
James W. MacDonald
68k • written 6 months ago by
Sara
• 0
0
votes
0
replies
1.8k
views
Comment:
Comment: How should I handle read counts derived from SGSeq when they were passed to limm
12 months ago
Sara
• 0
0
votes
0
replies
1.4k
views
Comment:
Comment: Custom gene annotations for SGSeq
13 months ago
Sara
• 0
0
votes
2
replies
1.2k
views
How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
DESeq2
single-cell
scRNA
Pseudobulk
updated 15 months ago by
Guido Hooiveld
★ 4.1k • written 15 months ago by
Sara
• 0
0
votes
0
replies
2.9k
views
Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
15 months ago
Sara
• 0
2
votes
1
reply
725
views
How to design DEXSeq formula for multiple variables
DEXSeq
15 months ago • updated 14 months ago
Sara
• 0
0
votes
1
reply
2.9k
views
Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
15 months ago
Sara
• 0
3
votes
1
reply
817
views
How to save the DEXSeq results
DEXSeq
updated 16 months ago by
Michael Love
43k • written 16 months ago by
Sara
• 0
0
votes
1
reply
2.9k
views
Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
16 months ago
Sara
• 0
0
votes
0
replies
2.9k
views
Comment:
Comment: SGSeq: moving toward diffex from SGSeq analysis
16 months ago
Sara
• 0
0
votes
0
replies
455
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
16 months ago
Sara
• 0
1
vote
1
reply
606
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 16 months ago by
kamryncole1963
• 0 • written 17 months ago by
Sara
• 0
0
votes
1
reply
2.7k
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Comment:
Comment: removing the batch effect for vst counts and defining the batches in removeBatch
2.1 years ago
Sara
• 0
0
votes
0
replies
2.7k
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Comment:
Comment: removing the batch effect for vst counts and defining the batches in removeBatch
2.1 years ago
Sara
• 0
2
votes
5
replies
2.7k
views
removing the batch effect for vst counts and defining the batches in removeBatchEffect function
DESeq2
BatchEffect
limma
updated 2.1 years ago by
Gordon Smyth
52k • written 2.1 years ago by
Sara
• 0
0
votes
1
reply
1.1k
views
really low padj value from DESeq2
DESeq2
updated 2.2 years ago by
ATpoint
★ 4.9k • written 2.2 years ago by
Sara
• 0
0
votes
1
reply
61k
views
Comment:
Comment: deseq2 filter the low counts
2.2 years ago
Sara
• 0
0
votes
1
reply
61k
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Comment:
Comment: deseq2 filter the low counts
2.2 years ago
Sara
• 0
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