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SGSeq
•
reset
0
votes
0
replies
98
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
24 days ago
Alison
• 0
0
votes
4
replies
944
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq
limma
edgeR
updated 3.1 years ago by
Leonard Goldstein
▴ 150 • written 3.1 years ago by
zliu
• 0
3
votes
8
replies
2.8k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 3.9 years ago by
anjanhazra
• 0 • written 7.3 years ago by
Sylvain Foisy
▴ 50
0
votes
1
reply
620
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 4.0 years ago by
Leonard Goldstein
▴ 150 • written 4.0 years ago by
anjanhazra
• 0
3
votes
3
replies
719
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 4.0 years ago by
Leonard Goldstein
▴ 150 • written 4.0 years ago by
116100016
• 0
0
votes
2
replies
642
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 4.1 years ago by
Leonard Goldstein
▴ 150 • written 4.1 years ago by
116100016
• 0
0
votes
0
replies
752
views
How to run my own data using SGSeq?
annotation
sgseq
updated 4.8 years ago by
shepherl
3.6k • written 4.8 years ago by
huizeng
• 0
0
votes
6
replies
1.3k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq
alternative splicing
SGSeq
5.1 years ago
andrea.bast
• 0
0
votes
1
reply
798
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 6.1 years ago by
Leonard Goldstein
▴ 150 • written 6.1 years ago by
mgdrnl
• 0
1
vote
1
reply
1.5k
views
SGSeq error on getBamInfo
SGSeq
getBamInfo
RNASeq
updated 6.2 years ago by
Leonard Goldstein
▴ 150 • written 6.2 years ago by
oolongoni
▴ 10
3
votes
5
replies
1.4k
views
R session crash with SGSeq::convertToTxFeatures
crash
SGSeq
TxDb
makeTxDbFromBiomart
TxFeatures
updated 6.2 years ago by
Leonard Goldstein
▴ 150 • written 6.2 years ago by
oolongoni
▴ 10
6
votes
4
replies
1.4k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 6.3 years ago by
Leonard Goldstein
▴ 150 • written 6.3 years ago by
Sylvain Foisy
▴ 50
0
votes
3
replies
990
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 6.4 years ago by
Leonard Goldstein
▴ 150 • written 6.4 years ago by
amanda.joy.price
• 0
0
votes
5
replies
1.5k
views
Error when running getSGFeatureCounts
SGSeq
software error
updated 6.8 years ago by
Leonard Goldstein
▴ 150 • written 6.8 years ago by
jpromero
• 0
0
votes
15
replies
1.9k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq
analyzevariants
updated 7.0 years ago by
Leonard Goldstein
▴ 150 • written 7.2 years ago by
Sylvain Foisy
▴ 50
0
votes
15
replies
2.9k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 7.2 years ago by
Leonard Goldstein
▴ 150 • written 7.3 years ago by
Sylvain Foisy
▴ 50
3
votes
16
replies
2.3k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 7.7 years ago by
Leonard Goldstein
▴ 150 • written 7.7 years ago by
vakul.mohanty
▴ 10
2
votes
2
replies
1.4k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 7.8 years ago by
Leonard Goldstein
▴ 150 • written 7.8 years ago by
Chao-Jen Wong
▴ 30
0
votes
6
replies
1.7k
views
Error when predicting features with SGSeq
SGSeq
updated 8.4 years ago by
Leonard Goldstein
▴ 70 • written 8.4 years ago by
Helen Zhou
▴ 140
0
votes
6
replies
1.9k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
9.0 years ago • updated 8.9 years ago
Paolo Guarnieri
▴ 20
20 results • Page
1 of 1
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Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
Basti
▴ 740
The image is blurred, but you need to follow ATpoint advice and restart the entire analysis using a clean environment.
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
This is my running code myDMP <- champ.DMP(beta = myNormA, pheno = myLoad$pd$Sample_Group, …
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
![enter image description here][1] Thank you for your reply. I am a beginner. What I meant was that I could have obtained this image yester…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
ATpoint
★ 3.6k
I don't follow what you mean by "Normal" but in general, when you run code and it returns different results indicates that you might have o…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
Thank you for your reply, but for some reason, when I ran this code yesterday, it was normal
Votes
A: DSS understanding delta option and posterior probability
Comment: Ensembl down???
Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Problem loading HDF5Array in R 4.3.2
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