Showing : SGSeq • reset
10
votes
11
replies
3.4k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 21 months ago by • 0 • written 8.5 years ago by ▴ 80
0
votes
0
replies
614
views
how to do Differential splicing from SGSeq analysis
DEXSeq SGSeq
22 months ago Sara • 0
1
vote
1
reply
716
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 22 months ago by • 0 • written 22 months ago by • 0
1
vote
0
replies
922
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag SplicedAlignment SGSeq minimap2
24 months ago jk ▴ 10
0
votes
0
replies
660
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
2.3 years ago Alison • 0
2
votes
5
replies
2.1k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq limma edgeR
updated 18 months ago by • 0 • written 5.4 years ago by ▴ 10
6
votes
8
replies
4.2k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 6.2 years ago by ▴ 10 • written 9.6 years ago by ▴ 80
2
votes
1
reply
1.3k
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 6.2 years ago by ▴ 260 • written 6.2 years ago by ▴ 10
4
votes
4
replies
1.6k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 19 months ago by • 0 • written 6.3 years ago by • 0
0
votes
2
replies
1.5k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 6.4 years ago by ▴ 260 • written 6.4 years ago by • 0
0
votes
0
replies
1.2k
views
How to run my own data using SGSeq?
annotation sgseq
updated 7.1 years ago by 4.3k • written 7.1 years ago by • 0
0
votes
6
replies
2.3k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq alternative splicing SGSeq
7.3 years ago andrea.bast • 0
0
votes
1
reply
1.4k
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 8.4 years ago by ▴ 260 • written 8.4 years ago by • 0
2
votes
1
reply
2.2k
views
SGSeq error on getBamInfo
SGSeq getBamInfo RNASeq
updated 8.4 years ago by ▴ 260 • written 8.4 years ago by ▴ 40
4
votes
5
replies
2.2k
views
R session crash with SGSeq::convertToTxFeatures
crash SGSeq TxDb makeTxDbFromBiomart TxFeatures
updated 8.4 years ago by ▴ 260 • written 8.4 years ago by ▴ 40
3
votes
3
replies
2.1k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 8.7 years ago by ▴ 260 • written 8.7 years ago by ▴ 10
1
vote
5
replies
2.2k
views
Error when running getSGFeatureCounts
SGSeq software error
updated 9.1 years ago by ▴ 260 • written 9.1 years ago by ▴ 10
0
votes
15
replies
3.5k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq analyzevariants
updated 9.2 years ago by ▴ 260 • written 9.4 years ago by ▴ 80
1
vote
15
replies
4.8k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 9.4 years ago by ▴ 260 • written 9.6 years ago by ▴ 80
5
votes
16
replies
3.9k
views
Read counts generated by SGSeq are always 0
sgseq splicing alternative splicing
updated 10.0 years ago by ▴ 260 • written 10.0 years ago by ▴ 20
2
votes
2
replies
2.0k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 10.0 years ago by ▴ 260 • written 10.0 years ago by ▴ 40
1
vote
6
replies
2.6k
views
Error when predicting features with SGSeq
SGSeq
updated 10.6 years ago by ▴ 90 • written 10.6 years ago by ▴ 150
1
vote
6
replies
2.9k
views
SGSeq error on analyzeFeatures
SGSeq analyzeFeatures Splicing
11.2 years ago Paolo Guarnieri ▴ 20
23 results • Page 1 of 1
Recent ...
Replies
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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