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1
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1.0k
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Answer:
Answer: vst transformation and zero counts
23 months ago
Michael Love
43k
0
votes
1
reply
2.9k
views
Comment:
Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
23 months ago
Michael Love
43k
0
votes
1
reply
2.9k
views
Answer:
Answer: How to calculate p value when comparing two sets of DEGs and not applying intera
23 months ago
Michael Love
43k
0
votes
1
reply
2.9k
views
Comment:
Comment: Normalizing Salmon output count data matrix using DESeq2
23 months ago
Michael Love
43k
0
votes
1
reply
4.9k
views
Comment:
Comment: DESeq2::sizeFactors() function does not output the sizeFactor table.
23 months ago
Michael Love
43k
0
votes
1
reply
1.6k
views
Answer:
Answer: utf-8 codec can't decode byte 0xd5
23 months ago
Michael Love
43k
0
votes
0
replies
1.2k
views
Comment:
Comment: DESeq2: Adjust for treatment effect patient vs control
23 months ago
Michael Love
43k
0
votes
0
replies
1.2k
views
Comment:
Comment: DESEQ2 Repeated Measures-like design error help
23 months ago
Michael Love
43k
0
votes
1
reply
1.2k
views
Answer:
Answer: DESeq2: Adjust for treatment effect patient vs control
23 months ago
Michael Love
43k
0
votes
0
replies
2.1k
views
Answer:
Answer: Pseudobulk-DESeq2 analyze multiple cell types at once?
23 months ago
Michael Love
43k
0
votes
1
reply
1.4k
views
Answer:
Answer: DESeq filtering specific to contrasts
23 months ago
Michael Love
43k
0
votes
1
reply
889
views
Answer:
Answer: help checking the design matrix and contrast in DESeq2 "not full rank" scenario
23 months ago
Michael Love
43k
0
votes
0
replies
696
views
Answer:
Answer: Double batch effect (Individuals nested within blocks in DESeq2)
23 months ago
Michael Love
43k
1
vote
1
reply
1.0k
views
Answer:
Answer: DESeq2 issue: can't create DESeq2 object
23 months ago
Michael Love
43k
0
votes
1
reply
1.2k
views
Comment:
Comment: DESEQ2 Repeated Measures-like design error help
23 months ago
Michael Love
43k
0
votes
1
reply
1.2k
views
Answer:
Answer: DESEQ2 Repeated Measures-like design error help
23 months ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Comment:
Comment: DESeq2 interaction terms RIPseq analysis
23 months ago
Michael Love
43k
0
votes
1
reply
1.1k
views
Answer:
Answer: DESeq2 interaction terms RIPseq analysis
23 months ago
Michael Love
43k
0
votes
1
reply
1.5k
views
Comment:
Comment: DESeq2 aborting after upgrade
24 months ago
Michael Love
43k
2
votes
0
replies
806
views
Answer:
Answer: Continuous variable to identify responder genes using DESeq2
24 months ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Comment:
Comment: LOG2FC DESEQ2
24 months ago
Michael Love
43k
0
votes
0
replies
1.2k
views
Comment:
Comment: Big differences between biological replicates makes DESeq2 result 0
24 months ago
Michael Love
43k
0
votes
0
replies
455
views
Answer:
Answer: unequal number of treatmets to control
24 months ago
Michael Love
43k
0
votes
1
reply
1.1k
views
Answer:
Answer: Batch effects removal across mRNA seq studies addressing different biological qu
24 months ago
Michael Love
43k
1
vote
0
replies
883
views
Answer:
Answer: PCA after DESeq2
24 months ago
Michael Love
43k
0
votes
0
replies
958
views
Answer:
Answer: DESeq2 lfcShrink drastic shrinkage
24 months ago
Michael Love
43k
1
vote
1
reply
1.3k
views
Answer:
Answer: DESeq2 analysis on time-series RNA experiment
24 months ago
Michael Love
43k
0
votes
1
reply
1.5k
views
Answer:
Answer: DESeq2 aborting after upgrade
24 months ago
Michael Love
43k
1
vote
2
replies
1.2k
views
Answer:
Answer: Big differences between biological replicates makes DESeq2 result 0
2.0 years ago
Michael Love
43k
0
votes
1
reply
2.1k
views
Answer:
Answer: Regressing out covariates from expression matrix for PCA visualization - can I u
2.0 years ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Comment:
Comment: Interaction tests and paired interaction tests in swish
2.0 years ago
Michael Love
43k
0
votes
1
reply
1.1k
views
Answer:
Answer: Interaction tests and paired interaction tests in swish
2.0 years ago
Michael Love
43k
0
votes
1
reply
895
views
Answer:
Answer: Which fasta files to use for tximeta makeLinkTxome
2.0 years ago
Michael Love
43k
0
votes
0
replies
555
views
Answer:
Answer: DESEQ2 reduced model input into Pathfindr
2.0 years ago
Michael Love
43k
0
votes
0
replies
822
views
Answer:
Answer: Behavior of most genes in Ribosome-footprints dataset deviates from expected
2.0 years ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Answer:
Answer: Deleting a column from data frame and then running DESeq2
2.0 years ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Comment:
Comment: Deleting a column from data frame and then running DESeq2
2.0 years ago
Michael Love
43k
0
votes
1
reply
2.1k
views
Answer:
Answer: Plotting mean TPM of an expressed gene
2.0 years ago
Michael Love
43k
0
votes
0
replies
929
views
Answer:
Answer: Running Deseq2 with all samples vs samples for each comparison separately
2.0 years ago
Michael Love
43k
0
votes
0
replies
2.9k
views
Comment:
Comment: DESeq2 design with multiple factors
2.0 years ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Comment:
Comment: DESeq2 multi-factor design and interaction terms
2.0 years ago
Michael Love
43k
1
vote
1
reply
1.4k
views
Comment:
Comment: distanceToNearest
2.0 years ago
Michael Love
43k
0
votes
1
reply
2.9k
views
Answer:
Answer: DESeq2 design with multiple factors
2.0 years ago
Michael Love
43k
1
vote
0
replies
1.1k
views
Answer:
Answer: DESeq2 Normalization for QC Samples
2.1 years ago
Michael Love
43k
0
votes
0
replies
2.6k
views
Comment:
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
2.1 years ago
Michael Love
43k
0
votes
0
replies
1.1k
views
Answer:
Answer: DESeq2 interaction term + sva
2.1 years ago
Michael Love
43k
0
votes
0
replies
919
views
Comment:
Comment: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
2.1 years ago
Michael Love
43k
0
votes
1
reply
919
views
Answer:
Answer: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
2.1 years ago
Michael Love
43k
0
votes
0
replies
1.9k
views
Answer:
Answer: DESeq2 collinearity, adjusting for covariates, and the ground truth
2.1 years ago
Michael Love
43k
0
votes
0
replies
1.3k
views
Comment:
Comment: Different genes expression with limma
2.1 years ago
Michael Love
43k
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