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Comment: Comment: utf-8 codec can't decode byte 0xd5
10 weeks ago Michael Love 41k
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Comment: Comment: vst transformation and zero counts
10 weeks ago Michael Love 41k
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370
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Answer: Answer: vst transformation and zero counts
10 weeks ago Michael Love 41k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
10 weeks ago Michael Love 41k
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Answer: Answer: How to calculate p value when comparing two sets of DEGs and not applying intera
10 weeks ago Michael Love 41k
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1.4k
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Comment: Comment: Normalizing Salmon output count data matrix using DESeq2
10 weeks ago Michael Love 41k
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Comment: Comment: DESeq2::sizeFactors() function does not output the sizeFactor table.
10 weeks ago Michael Love 41k
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339
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Answer: Answer: utf-8 codec can't decode byte 0xd5
10 weeks ago Michael Love 41k
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Comment: Comment: DESeq2: Adjust for treatment effect patient vs control
10 weeks ago Michael Love 41k
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427
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Comment: Comment: DESEQ2 Repeated Measures-like design error help
10 weeks ago Michael Love 41k
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403
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Answer: Answer: DESeq2: Adjust for treatment effect patient vs control
11 weeks ago Michael Love 41k
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394
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Answer: Answer: Pseudobulk-DESeq2 analyze multiple cell types at once?
11 weeks ago Michael Love 41k
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423
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Answer: Answer: DESeq filtering specific to contrasts
11 weeks ago Michael Love 41k
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435
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Answer: Answer: help checking the design matrix and contrast in DESeq2 "not full rank" scenario
11 weeks ago Michael Love 41k
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Answer: Answer: Double batch effect (Individuals nested within blocks in DESeq2)
11 weeks ago Michael Love 41k
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222
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Answer: Answer: DESeq2 issue: can't create DESeq2 object
11 weeks ago Michael Love 41k
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427
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Comment: Comment: DESEQ2 Repeated Measures-like design error help
12 weeks ago Michael Love 41k
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427
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Answer: Answer: DESEQ2 Repeated Measures-like design error help
12 weeks ago Michael Love 41k
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256
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Comment: Comment: DESeq2 interaction terms RIPseq analysis
12 weeks ago Michael Love 41k
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256
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Answer: Answer: DESeq2 interaction terms RIPseq analysis
12 weeks ago Michael Love 41k
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456
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Comment: Comment: DESeq2 aborting after upgrade
3 months ago Michael Love 41k
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215
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Answer: Answer: Continuous variable to identify responder genes using DESeq2
3 months ago Michael Love 41k
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372
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Comment: Comment: LOG2FC DESEQ2
3 months ago Michael Love 41k
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397
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Comment: Comment: Big differences between biological replicates makes DESeq2 result 0
3 months ago Michael Love 41k
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188
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Answer: Answer: unequal number of treatmets to control
3 months ago Michael Love 41k
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268
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Answer: Answer: Batch effects removal across mRNA seq studies addressing different biological qu
3 months ago Michael Love 41k
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295
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Answer: Answer: PCA after DESeq2
3 months ago Michael Love 41k
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241
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Answer: Answer: DESeq2 lfcShrink drastic shrinkage
3 months ago Michael Love 41k
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337
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Answer: Answer: DESeq2 analysis on time-series RNA experiment
3 months ago Michael Love 41k
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456
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Answer: Answer: DESeq2 aborting after upgrade
3 months ago Michael Love 41k
1
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2
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397
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Answer: Answer: Big differences between biological replicates makes DESeq2 result 0
3 months ago Michael Love 41k
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1
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478
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Answer: Answer: Regressing out covariates from expression matrix for PCA visualization - can I u
3 months ago Michael Love 41k
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0
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306
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Comment: Comment: Interaction tests and paired interaction tests in swish
3 months ago Michael Love 41k
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1
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306
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Answer: Answer: Interaction tests and paired interaction tests in swish
3 months ago Michael Love 41k
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274
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Answer: Answer: Which fasta files to use for tximeta makeLinkTxome
3 months ago Michael Love 41k
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240
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Answer: Answer: DESEQ2 reduced model input into Pathfindr
3 months ago Michael Love 41k
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243
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Answer: Answer: Behavior of most genes in Ribosome-footprints dataset deviates from expected
3 months ago Michael Love 41k
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337
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Answer: Answer: Deleting a column from data frame and then running DESeq2
3 months ago Michael Love 41k
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0
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337
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Comment: Comment: Deleting a column from data frame and then running DESeq2
3 months ago Michael Love 41k
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1
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417
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Answer: Answer: Plotting mean TPM of an expressed gene
3 months ago Michael Love 41k
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0
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285
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago Michael Love 41k
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586
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Comment: Comment: DESeq2 design with multiple factors
3 months ago Michael Love 41k
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273
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Comment: Comment: DESeq2 multi-factor design and interaction terms
3 months ago Michael Love 41k
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1
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516
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Comment: Comment: distanceToNearest
3 months ago Michael Love 41k
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1
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586
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Answer: Answer: DESeq2 design with multiple factors
3 months ago Michael Love 41k
1
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0
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417
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Answer: Answer: DESeq2 Normalization for QC Samples
3 months ago Michael Love 41k
0
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0
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919
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago Michael Love 41k
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0
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390
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Answer: Answer: DESeq2 interaction term + sva
4 months ago Michael Love 41k
0
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0
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471
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Comment: Comment: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
4 months ago Michael Love 41k
0
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1
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471
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Answer: Answer: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
4 months ago Michael Love 41k
7,927 results • Page 3 of 159
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