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Answer: Answer: DESeq2 aborting after upgrade
3 months ago Michael Love 42k
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2
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428
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Answer: Answer: Big differences between biological replicates makes DESeq2 result 0
3 months ago Michael Love 42k
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1
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556
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Answer: Answer: Regressing out covariates from expression matrix for PCA visualization - can I u
3 months ago Michael Love 42k
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324
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Comment: Comment: Interaction tests and paired interaction tests in swish
3 months ago Michael Love 42k
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1
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324
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Answer: Answer: Interaction tests and paired interaction tests in swish
3 months ago Michael Love 42k
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1
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298
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Answer: Answer: Which fasta files to use for tximeta makeLinkTxome
3 months ago Michael Love 42k
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246
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Answer: Answer: DESEQ2 reduced model input into Pathfindr
3 months ago Michael Love 42k
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255
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Answer: Answer: Behavior of most genes in Ribosome-footprints dataset deviates from expected
3 months ago Michael Love 42k
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355
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Answer: Answer: Deleting a column from data frame and then running DESeq2
3 months ago Michael Love 42k
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0
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355
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Comment: Comment: Deleting a column from data frame and then running DESeq2
3 months ago Michael Love 42k
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1
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457
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Answer: Answer: Plotting mean TPM of an expressed gene
3 months ago Michael Love 42k
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310
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago Michael Love 42k
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621
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Comment: Comment: DESeq2 design with multiple factors
4 months ago Michael Love 42k
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0
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289
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Comment: Comment: DESeq2 multi-factor design and interaction terms
4 months ago Michael Love 42k
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1
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538
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Comment: Comment: distanceToNearest
4 months ago Michael Love 42k
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1
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621
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Answer: Answer: DESeq2 design with multiple factors
4 months ago Michael Love 42k
1
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0
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451
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Answer: Answer: DESeq2 Normalization for QC Samples
4 months ago Michael Love 42k
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956
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago Michael Love 42k
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0
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399
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Answer: Answer: DESeq2 interaction term + sva
4 months ago Michael Love 42k
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0
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482
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Comment: Comment: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
4 months ago Michael Love 42k
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1
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482
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Answer: Answer: DESeq2: Difference in DEG numbers when switching reference condition (numerator,
4 months ago Michael Love 42k
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0
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601
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Answer: Answer: DESeq2 collinearity, adjusting for covariates, and the ground truth
5 months ago Michael Love 42k
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0
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549
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Comment: Comment: Different genes expression with limma
5 months ago Michael Love 42k
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1
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956
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
5 months ago Michael Love 42k
0
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1
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956
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
5 months ago Michael Love 42k
0
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1
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956
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Answer: Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
5 months ago Michael Love 42k
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0
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
5 months ago Michael Love 42k
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0
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572
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Answer: Answer: DESeq2 : stat or lfcshrink for GSEA analysis
5 months ago Michael Love 42k
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
5 months ago Michael Love 42k
2
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0
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585
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Answer: Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
5 months ago Michael Love 42k
1
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0
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523
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Comment: Comment: DESeq2 estimateSizeFactors iterate takes too long
5 months ago Michael Love 42k
1
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0
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304
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Answer: Answer: Lower FDR cutoff gives more gene counts
5 months ago Michael Love 42k
1
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0
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394
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Answer: Answer: Using DESeq2 statistical framework with to identify differentially expressed loc
5 months ago Michael Love 42k
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0
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481
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
5 months ago Michael Love 42k
1
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0
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375
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Answer: Answer: Limma/DESeq2 for unbalanced nested design (paired samples)
5 months ago Michael Love 42k
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0
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284
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Answer: Answer: How to use DESeq results with LRT vs. with Wald's test
5 months ago Michael Love 42k
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0
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340
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Answer: Answer: DEseq2 : Complex design with a mixture of male and female mice
5 months ago Michael Love 42k
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1
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404
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Answer: Answer: Help Subsetting DDS for plotPCA for contrast groups
5 months ago Michael Love 42k
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1
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488
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Answer: Answer: Deseq2 - Pairwise results from 6 conditions - error non-conformable arguments
5 months ago Michael Love 42k
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0
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701
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Comment: Comment: Unable to replicate figures of CBCS data after nSolver and RUVSeq normalization
5 months ago Michael Love 42k
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0
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369
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Answer: Answer: DESeq2 and determining effects of treatment on a priori/candidate genes from a b
5 months ago Michael Love 42k
2
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1
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438
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Answer: Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
5 months ago Michael Love 42k
1
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1
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646
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Answer: Answer: Can DESeq2 be used to compare groups of genes?
5 months ago Michael Love 42k
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1
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522
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Answer: Answer: DESeq2 for microbiome data: raw counts or percentages?
6 months ago Michael Love 42k
1
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1
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738
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Comment: Comment: DESeq2 unable to handle large count values
6 months ago Michael Love 42k
0
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0
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648
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Answer: Answer: tximeta errors: couldn't find matching transcriptome, returning non-ranged Summa
6 months ago Michael Love 42k
0
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1
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397
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Answer: Answer: Swimming downstream: transcript fold changes
6 months ago Michael Love 42k
2
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2
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738
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Answer: Answer: DESeq2 unable to handle large count values
6 months ago Michael Love 42k
0
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0
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990
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Comment: Comment: SparseArray unable to install on Bioc 3.18
6 months ago Michael Love 42k
0
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1
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990
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Comment: Comment: SparseArray unable to install on Bioc 3.18
6 months ago Michael Love 42k
7,948 results • Page 4 of 159
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