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Comment: C: pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?
updated 4.1 years ago by 45k • written 8.4 years ago by ▴ 310
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812
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plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma diffSplice plotSplice exons annotation
6.8 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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3.2k
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Comment: C: edgeR MDS
updated 7.3 years ago by 45k • written 9.1 years ago by ▴ 310
2
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1
reply
1.4k
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calcNormFactors TMM vs RLE - plotMA not centered
normalization edger
updated 7.6 years ago by 45k • written 7.6 years ago by ▴ 310
0
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1
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700
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Comment: C: What are the best packages to compare multiple DE gene lists?
7.8 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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2.2k
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Comment: C: Annotation files for bacterial genome RNAseq
8.0 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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1.1k
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Comment: C: DEXSeq output - count file
8.2 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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1.1k
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Comment: C: DEXSeq output - count file
8.2 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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1.1k
views
Answer: A: DEXSeq output - count file
8.2 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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1.2k
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Comment: C: DEXSeq output - count file
8.3 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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1.2k
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Comment: C: DEXSeq output - count file
8.3 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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896
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Comment: C: dexseq zero length exons
8.3 years ago Jose M Garcia Manteiga ▴ 310
0
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2
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896
views
dexseq zero length exons
Annotation DEXSeq Annotation DEXSeq
updated 8.3 years ago by ★ 1.8k • written 8.3 years ago by ▴ 310
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1
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985
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Comment: C: Annotation different expressed exon. results from DESeq
8.3 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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1.4k
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Comment: C: dexseq_count.py SAM "NH" taq
8.3 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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1.4k
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Answer: A: dexseq_count.py SAM "NH" taq
8.3 years ago Jose M Garcia Manteiga ▴ 310
0
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3
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1.4k
views
dexseq_count.py SAM "NH" taq
DEXSeq DEXSeq
8.3 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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3.1k
views
Answer: A: pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?
8.4 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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7.2k
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Comment: C: DESeq2: NA on padj column when doing bonferroni
8.4 years ago Jose M Garcia Manteiga ▴ 310
0
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1
reply
9.7k
views
Comment: C: pre-ranked GSEA within R?
8.4 years ago Jose M Garcia Manteiga ▴ 310
1
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1
reply
9.7k
views
Answer: A: pre-ranked GSEA within R?
8.4 years ago Jose M Garcia Manteiga ▴ 310
0
votes
1
reply
1.9k
views
deseq2 plotMA
GO graph DESeq2 GO graph DESeq2
updated 8.7 years ago by 37k • written 8.7 years ago by ▴ 310
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0
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3.8k
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Comment: C: Summarized Experiments - Combine
8.7 years ago Jose M Garcia Manteiga ▴ 310
0
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2
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3.8k
views
Summarized Experiments - Combine
DESeq DESeq2 DESeq DESeq2
updated 8.7 years ago by ★ 6.7k • written 8.7 years ago by ▴ 310
0
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1
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2.2k
views
Comment: C: DESeq2 : when the variable of interest is not a factor
8.8 years ago Jose M Garcia Manteiga ▴ 310
0
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2
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2.2k
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Answer: A: DESeq2 : when the variable of interest is not a factor
8.8 years ago Jose M Garcia Manteiga ▴ 310
0
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0
replies
2.2k
views
Answer: A: DESeq2 : when the variable of interest is not a factor
8.8 years ago Jose M Garcia Manteiga ▴ 310
0
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0
replies
870
views
Comment: C: DESeq2 design formula error?
8.9 years ago Jose M Garcia Manteiga ▴ 310
0
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2
replies
1.4k
views
HT-Seq count and GTF
updated 8.9 years ago by ★ 3.7k • written 8.9 years ago by ▴ 310
0
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0
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799
views
Comment: C: input format for Mfuzz clustering
8.9 years ago Jose M Garcia Manteiga ▴ 310
0
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2
replies
722
views
Gene Ontologies exploration
goProfiles GeneAnswers goProfiles GeneAnswers
updated 9.4 years ago by ★ 7.2k • written 9.4 years ago by ▴ 310
31 results • Page 1 of 1
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