Showing : exons • reset
6
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4
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857
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the coordinates of exons of RefSeq or ENSEMBL genes
txdb genome exons
updated 2.5 years ago by 25k • written 2.5 years ago by ▴ 620
2
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4
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598
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Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
txdb txdb.hsapiens.ucsc.hg19.knowngene granges exons ucsc
updated 3.1 years ago by 58k • written 3.1 years ago by ▴ 10
0
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0
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304
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Filtering probesets for HuEx ST1.0 after probeset normalization
microarray exons probefiltering
3.2 years ago GENOMIC_region • 0
2
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3
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491
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Human Exon: arome.affymetrix residuals Inf value
exons exon array analysis
updated 3.2 years ago by 58k • written 3.2 years ago by • 0
2
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1
reply
1.0k
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Extracting UTRs from exon and CDS data
genomeintervals UTRs exons CDS GenomicRanges
updated 4.5 years ago by 11k • written 4.5 years ago by ▴ 100
0
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3
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775
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Increased number of total exons in DEXSeq
dexseq exons grch37
4.9 years ago aditi ▴ 20
2
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6
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1.4k
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Using TCGAbiolinks for exon and oligonucleotide level microarray
tcga tcgabiolinks microarray exons oligonucleotide
updated 5.7 years ago by ▴ 160 • written 5.7 years ago by • 0
3
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7
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851
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To find Differential expressed exons using xps package
xps exons
updated 5.8 years ago by ★ 3.9k • written 5.8 years ago by ▴ 90
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779
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plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma diffSplice plotSplice exons annotation
6.4 years ago Jose M Garcia Manteiga ▴ 310
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1
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1.4k
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Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate exons txdb.hsapiens.ucsc.hg19.knowngene
6.6 years ago adnan.niazi • 0
0
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1
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823
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Extract exon features from overlapping genes
GenomicFeatures exons
updated 6.7 years ago by 15k • written 6.7 years ago by • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
It looks like you only have a single sample.
Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0
I get the following > design = model.matrix(~ es$condition) > design (Intercept) es$conditiondex4 attr(,"assign") [1] 0 1 attr(,"co…
Comment: How to use subjunc for differential splicing analysis? by Yang Liao ▴ 280
Annotation to the *subjunc* aligner helps the aligner to better map the reads. The aligner generates BAM files, which contains mapped reads…
Answer: universalmotif, question about enrich_motifs function and number of hits returne by btremblay ▴ 30
Hi, After doing some digging I've isolated the issue to being related to the threshold calculation which you request with the `threshold…
Answer: DE analysis model matrix for paired samples by Michael Love 35k
Agree with swbarnes2. It just seems like the condition effect is very small. Also I'd double check the metadata. Sometimes samples are swap…
Votes
A: DNAcopy
Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
Answer: How to use subjunc for differential splicing analysis?
Answer: catchKallisto results are not counts
Answer: catchKallisto results are not counts
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