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1
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1.2k
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Limma FDR and p.value
updated 5.2 years ago by 50k • written 19.4 years ago by ★ 1.1k
0
votes
11
replies
10k
views
heatmap.2 ..help..how to cluster column ..but not Rows..
13.1 years ago SAURIN ★ 1.1k
0
votes
1
reply
1.0k
views
consistant Heatmap image based on number of genes and size of samples? - help
updated 13.4 years ago by ▴ 930 • written 13.4 years ago by ★ 1.1k
0
votes
8
replies
1.7k
views
heatmap Clustering help, two class (Control vs Exp) Experiments,
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ★ 1.1k
0
votes
3
replies
879
views
what is good book to learn Next Gen. Seq. analysis?
updated 14.3 years ago by ▴ 610 • written 14.3 years ago by ★ 1.1k
0
votes
2
replies
855
views
Probeid to GOTerms... from AnnotationDBI?
GO convert AnnotationDbi GO convert AnnotationDbi
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ★ 1.1k
0
votes
0
replies
576
views
how one can load appropriate GeneChip (cdf, etc.) env. by just reading Probe IDs,
probe probe
15.7 years ago SAURIN ★ 1.1k
0
votes
2
replies
336
views
help for BH - FDR and Fold Change filtering question,
updated 16.6 years ago by 65k • written 16.6 years ago by ★ 1.1k
0
votes
1
reply
607
views
How to cite GCRMA and SAM for paper?
gcrma gcrma
updated 18.3 years ago by ▴ 200 • written 18.3 years ago by ★ 1.1k
0
votes
4
replies
1.4k
views
how to get samoutput$mat.fdr and samoutput$delta from SAM object ? - help
siggenes siggenes
updated 18.4 years ago by 21k • written 18.4 years ago by ★ 1.1k
0
votes
3
replies
1.0k
views
why S-Score is not poppular like T-test pvalue and BH FDR , which is OK to use?
Microarray Microarray
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ★ 1.1k
0
votes
1
reply
801
views
5 genes with 4 diff. groups, Howmany Cells needs to be extracted and do LIMMA?
limma limma
updated 18.9 years ago by ★ 6.0k • written 18.9 years ago by ★ 1.1k
0
votes
2
replies
776
views
Install all CDF, Probes, Annotation metaData in One-Shot or Update them, How?
cdf cdf
updated 18.9 years ago by 65k • written 18.9 years ago by ★ 1.1k
0
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0
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610
views
Thank you for guidance, I highly appreciate that
19.0 years ago SAURIN ★ 1.1k
0
votes
6
replies
1.2k
views
LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?
affy affy
updated 9 weeks ago by 50k • written 19.0 years ago by ★ 1.1k
0
votes
0
replies
819
views
extract genes from vennDiagram LIMMA ..How?,
limma limma
19.1 years ago SAURIN ★ 1.1k
0
votes
1
reply
537
views
GOHyperG pvalue and expression value,
GO GO
updated 19.2 years ago by 21k • written 19.2 years ago by ★ 1.1k
0
votes
1
reply
1.0k
views
Limma Contrast Statistics for Affy CEL files,
limma limma
updated 19.2 years ago by 50k • written 19.2 years ago by ★ 1.1k
0
votes
0
replies
1.4k
views
from KEGG Gene ID to Gene Symbol or Name
19.2 years ago SAURIN ★ 1.1k
0
votes
0
replies
489
views
How to get Raw Affy Chip Intensity after RMA
19.3 years ago SAURIN ★ 1.1k
0
votes
0
replies
589
views
How can I extract Raw Intensities with Probe IDs on Affy Chips
affy affy
19.3 years ago SAURIN ★ 1.1k
0
votes
2
replies
1.7k
views
R --vanilla and Annotation pkg
rae230a rgu34a cdf probe rae230a rgu34a cdf probe
updated 19.3 years ago by ★ 3.9k • written 19.3 years ago by ★ 1.1k
0
votes
1
reply
1.0k
views
Limma error
updated 19.4 years ago by 50k • written 19.4 years ago by ★ 1.1k
1
vote
4
replies
5.9k
views
LIMMA error: No residual degrees of freedom
updated 19.4 years ago by 65k • written 19.4 years ago by ★ 1.1k
0
votes
1
reply
582
views
how often meta data pkgs updated..any rough idea..plz
updated 19.5 years ago by ★ 2.9k • written 19.5 years ago by ★ 1.1k
0
votes
0
replies
783
views
How can I get Heatmap using dChip clustering..which is nice & easy to see patterns
Clustering Clustering
19.5 years ago SAURIN ★ 1.1k
0
votes
0
replies
1.4k
views
qvalue ( ) ERROR: The estimated pi0 <= 0....
qvalue qvalue
19.5 years ago SAURIN ★ 1.1k
0
votes
0
replies
395
views
globaltest : geneplot & sample plot
19.5 years ago SAURIN ★ 1.1k
0
votes
0
replies
1.8k
views
How can I put color scale & legend on Heatmap
19.5 years ago SAURIN ★ 1.1k
0
votes
0
replies
744
views
GO: makeGOGraph Error in FUN(X[[1]], ...) : couldn't find function "convertRadius"
19.6 years ago SAURIN ★ 1.1k
0
votes
1
reply
595
views
How to convert Affy, aaf.handler..tables in to MS Excel files,
Annotation Annotation
updated 19.6 years ago by 65k • written 19.6 years ago by ★ 1.1k
0
votes
0
replies
704
views
GO graph Error in .local(x, y, ...) : Object "drawAgNode" not found
GO graph GO graph
19.6 years ago SAURIN ★ 1.1k
0
votes
3
replies
962
views
VSN error : 'ny' does not seem to be resulting from vsn
vsn vsn
updated 19.6 years ago by ★ 13k • written 19.6 years ago by ★ 1.1k
0
votes
2
replies
840
views
Heatmap ( )
updated 19.6 years ago by 21k • written 19.6 years ago by ★ 1.1k
0
votes
7
replies
1.1k
views
Rgraphviz warnings in R-2.0
Rgraphviz Rgraphviz
updated 19.6 years ago by ★ 3.9k • written 19.6 years ago by ★ 1.1k
0
votes
0
replies
360
views
how can I count sub element of list which: Probe IDs assoc. GOID ,
probe probe
19.6 years ago SAURIN ★ 1.1k
0
votes
0
replies
475
views
Error GOALLLOCUSID not found, R - 2.0
19.6 years ago SAURIN ★ 1.1k
0
votes
0
replies
558
views
How should I interpet heat map with dendrogram..
19.6 years ago SAURIN ★ 1.1k
0
votes
0
replies
696
views
Visualizing and distances using GO graph question,
GO graph GO graph
19.6 years ago SAURIN ★ 1.1k
0
votes
2
replies
932
views
Regarding Tcltk and CDF error
Cancer cdf rhdf5 Rgraphviz Cancer cdf rhdf5 Rgraphviz
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ★ 1.1k
0
votes
5
replies
1.2k
views
regarding saving R graphis images directly to directory
updated 19.9 years ago by ▴ 630 • written 19.9 years ago by ★ 1.1k
0
votes
0
replies
548
views
correction in my tcltk and CDF error question........
cdf cdf
19.9 years ago SAURIN ★ 1.1k
0
votes
0
replies
325
views
Fwd: Re: regarding saving R graphis images directly to directory
19.9 years ago SAURIN ★ 1.1k
0
votes
0
replies
529
views
BATCH: line 55: 5681 Broken pipe cat ${in}
19.9 years ago SAURIN ★ 1.1k
0
votes
0
replies
612
views
regarding tcltk-Ex.R X11 error 1
19.9 years ago SAURIN ★ 1.1k
0
votes
3
replies
666
views
Regarding Phenodata and MAIME data
updated 19.9 years ago by 65k • written 19.9 years ago by ★ 1.1k
0
votes
1
reply
665
views
if possible, please, let me know: where is R download for 64 bit Opteron AMD
Microarray Microarray
updated 19.9 years ago by ★ 3.9k • written 19.9 years ago by ★ 1.1k
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