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698
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limma design question - technical replicates
15.5 years ago Georg Otto ▴ 510
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4.0k
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Answer: A: variable as argument to makeContrasts (limma)
15.6 years ago Georg Otto ▴ 510
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6
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4.0k
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variable as argument to makeContrasts (limma)
15.6 years ago Georg Otto ▴ 510
0
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1
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4.0k
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Answer: A: variable as argument to makeContrasts (limma)
15.6 years ago Georg Otto ▴ 510
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0
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1.1k
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problem using annotation database with annaffy
Annotation GO zebrafish annaffy Annotation GO zebrafish annaffy
15.6 years ago Georg Otto ▴ 510
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3.7k
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Answer: A: Visualise KEGG pathway and highlight genes
15.7 years ago Georg Otto ▴ 510
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0
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1.4k
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limma warning: Estimation of var.prior failed
GO limma GO limma
16.4 years ago Georg Otto ▴ 510
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0
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1.7k
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Answer: A: agilent zebrafish array annotation
16.7 years ago Georg Otto ▴ 510
0
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2
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1.7k
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agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
16.7 years ago Georg Otto ▴ 510
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1.1k
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Answer: A: How to perform annotation using refseq IDs and GO ?
16.8 years ago Georg Otto ▴ 510
0
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1
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657
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annotation package and namespace
Annotation Annotation
updated 16.9 years ago by 25k • written 16.9 years ago by ▴ 510
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1
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734
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coerce matrix to aafTable
probe probe
updated 17.1 years ago by 67k • written 17.1 years ago by ▴ 510
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3
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1.0k
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suppress messages in rma
updated 17.2 years ago by 25k • written 17.2 years ago by ▴ 510
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1
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1.1k
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error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 17.4 years ago by 67k • written 17.4 years ago by ▴ 510
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1
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1.0k
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simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 17.6 years ago by ★ 1.1k • written 17.6 years ago by ▴ 510
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1
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1.5k
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Answer: A: problem in biomaRt: getBM(output="list")
18.0 years ago Georg Otto ▴ 510
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3
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1.5k
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problem in biomaRt: getBM(output="list")
biomaRt biomaRt
18.0 years ago Georg Otto ▴ 510
0
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3
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1.7k
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ExpressionSet, fitPLM confusion
cdf probe gcrma matchprobes affyPLM affyio cdf probe gcrma matchprobes affyPLM affyio
updated 18.0 years ago by ★ 13k • written 18.0 years ago by ▴ 510
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1
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3.0k
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ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 18.1 years ago by 67k • written 18.1 years ago by ▴ 510
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0
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2.1k
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Answer: A: biomaRt error in getGene
18.5 years ago Georg Otto ▴ 510
0
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5
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2.1k
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biomaRt error in getGene
probe biomaRt probe biomaRt
18.5 years ago Georg Otto ▴ 510
0
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2
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2.1k
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Answer: A: biomaRt error in getGene
18.5 years ago Georg Otto ▴ 510
0
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2
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885
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annotation package: get probenames from gene names
Annotation probe Annotation probe
updated 18.5 years ago by ▴ 50 • written 18.5 years ago by ▴ 510
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0
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896
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limma decideTests
probe limma probe limma
18.6 years ago Georg Otto ▴ 510
0
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2
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1.4k
views
biomaRt error
biomaRt biomaRt
updated 18.7 years ago by 67k • written 18.7 years ago by ▴ 510
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0
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1.6k
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Answer: A: coerce aafTable object into dataframe (annaffy)
18.8 years ago Georg Otto ▴ 510
0
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4
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1.6k
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coerce aafTable object into dataframe (annaffy)
annaffy annaffy
18.9 years ago • updated 18.8 years ago Georg Otto ▴ 510
0
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2
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2.0k
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Answer: A: nested design in limma?
18.9 years ago Georg Otto ▴ 510
0
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0
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1.6k
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Answer: A: coerce aafTable object into dataframe (annaffy)
18.9 years ago Georg Otto ▴ 510
0
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1
reply
573
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Answer: A: background correction
18.9 years ago Georg Otto ▴ 510
0
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0
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793
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Question: limma decideTests nestedF p-values
18.9 years ago Georg Otto ▴ 510
0
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0
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979
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error in limma read.maimages(files, source="imagene")
limma limma
18.9 years ago Georg Otto ▴ 510
0
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1
reply
847
views
limma backgroundCorrect problem
Normalization limma Normalization limma
updated 18.9 years ago by ▴ 10 • written 18.9 years ago by ▴ 510
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0
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919
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agilent zebrafish array annotation package
zebrafish zebrafish
19.0 years ago Georg Otto ▴ 510
0
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2
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1.1k
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calculating replicate average in exprs(eset)
19.1 years ago Georg Otto ▴ 510
0
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0
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1.1k
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Answer: A: calculating replicate average in exprs(eset)
19.1 years ago Georg Otto ▴ 510
0
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1
reply
1.2k
views
omit row dendrogram in heatmap
Clustering Clustering
updated 19.1 years ago by ▴ 140 • written 19.1 years ago by ▴ 510
0
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1
reply
808
views
coerce biomaRt martTable into data frame
probe biomaRt probe biomaRt
updated 19.2 years ago by ★ 13k • written 19.2 years ago by ▴ 510
0
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0
replies
847
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maanova error
maanova maanova
19.3 years ago Georg Otto ▴ 510
0
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2
replies
2.5k
views
limma makeContrasts error
limma limma
updated 19.3 years ago by ★ 3.4k • written 19.3 years ago by ▴ 510
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0
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1.3k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
19.4 years ago Georg Otto ▴ 510
0
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0
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1.3k
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Comment: C: Error in AnnBuilder writeAnnData2Pkg
19.6 years ago Georg Otto ▴ 510
0
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4
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1.3k
views
Error in AnnBuilder writeAnnData2Pkg
Annotation zebrafish AnnBuilder Annotation zebrafish AnnBuilder
updated 19.6 years ago by ★ 2.9k • written 19.6 years ago by ▴ 510
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0
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1.3k
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Comment: C: Error in AnnBuilder writeAnnData2Pkg
19.6 years ago Georg Otto ▴ 510
0
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6
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1.5k
views
problems using simpleaffy
probe simpleaffy probe simpleaffy
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 510
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0
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1.5k
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Comment: C: problems using simpleaffy
19.8 years ago Georg Otto ▴ 510
0
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0
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1.5k
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Comment: C: problems using simpleaffy
19.8 years ago Georg Otto ▴ 510
0
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1
reply
1.4k
views
limma: duplicateCorrelation error
updated 19.9 years ago by 52k • written 19.9 years ago by ▴ 510
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3
replies
1.3k
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problem using arrayQuality package
Normalization limma arrayQuality Normalization limma arrayQuality
updated 19.9 years ago by ▴ 500 • written 19.9 years ago by ▴ 510
0
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0
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1.3k
views
Comment: C: problem using arrayQuality package
19.9 years ago Georg Otto ▴ 510
51 results • Page 1 of 2
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