Bioconductor RNAseq123

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voom htseq edgeR limma RNASeq123

updated 5.4 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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RNAseq123

written 3.4 years ago by mmicky5050 • 0

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DESeq2 RNAseq123 rnaseq deseq2 metatranscriptomic

updated 17 months ago by Michael Love 42k • written 17 months ago by irish.prg • 0

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edgeR RNAseq123

updated 17 months ago by Gordon Smyth 50k • written 18 months ago by Istvan Albert ▴ 50

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snpeff python tophat r RNAseq123

updated 2.8 years ago by Kevin Blighe ★ 3.9k • written 2.8 years ago by kusum • 0

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RNAseq123

26 days ago • updated 12 days ago Lluís Revilla Sancho ▴ 730

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by Mohamed ▴ 30

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RNAseq123 Rna

updated 23 months ago by Gordon Smyth 50k • written 23 months ago by Mikołaj Mierzejewski • 0

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DESeq2 RNAseq123

15 months ago fatemeh.peimani • 0

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RNAseq123

17 months ago afsanarupa1 • 0

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RNASeqData RNAseq123

updated 5 months ago by ATpoint ★ 4.1k • written 5 months ago by kaurprab • 0

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.1 years ago Alan • 0

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RNAseq123

updated 3 months ago by difraiadomenico • 0 • written 3.2 years ago by demirkalecy ▴ 10

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RNAseq123

22 months ago Mohamed ▴ 30

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CircularRNA RNASeq RNAseq123

3.3 years ago rpokhre2 • 0

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 20 months ago by ATpoint ★ 4.1k • written 20 months ago by Mohamed ▴ 30

16 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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