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RNAseq123
•
reset
1
vote
3
replies
4.5k
views
Using TMM normalized counts in Deseq2
RNAseq123
written 3.4 years ago by
mmicky5050
• 0
12
votes
4
replies
4.5k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.4 years ago by
Gordon Smyth
50k • written 7.0 years ago by
wd
▴ 30
1
vote
6
replies
3.3k
views
KEGG enrichment analysis for non model organism
RNAseq123
17 months ago
afsanarupa1
• 0
5
votes
6
replies
2.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.1 years ago
Alan
• 0
0
votes
1
reply
1.5k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 18 months ago by
James W. MacDonald
66k • written 18 months ago by
Mohamed
▴ 30
1
vote
1
reply
1.4k
views
featureCounts running too long
RNAseq123
updated 3 months ago by
difraiadomenico
• 0 • written 3.2 years ago by
demirkalecy
▴ 10
2
votes
5
replies
1.1k
views
Can we massively improve RNA-Seq results by slightly reducing the counts in it?
edgeR
RNAseq123
updated 17 months ago by
Gordon Smyth
50k • written 18 months ago by
Istvan Albert
▴ 50
2
votes
1
reply
1.0k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 23 months ago by
Gordon Smyth
50k • written 23 months ago by
Mikołaj Mierzejewski
• 0
0
votes
3
replies
878
views
DESeq2 Statistic - Padj NA
DESeq2
RNAseq123
rnaseq
deseq2
metatranscriptomic
updated 17 months ago by
Michael Love
42k • written 17 months ago by
irish.prg
• 0
0
votes
1
reply
828
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
kusum
• 0
1
vote
1
reply
736
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 20 months ago by
ATpoint
★ 4.2k • written 20 months ago by
Mohamed
▴ 30
0
votes
2
replies
571
views
Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
DESeq2
RNAseq123
15 months ago
fatemeh.peimani
• 0
0
votes
0
replies
569
views
Plotting a line plot for genes across 4-species
RNAseq123
22 months ago
Mohamed
▴ 30
0
votes
0
replies
522
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
3.3 years ago
rpokhre2
• 0
1
vote
1
reply
355
views
Differential gene expression analysis
RNASeqData
RNAseq123
updated 5 months ago by
ATpoint
★ 4.2k • written 5 months ago by
kaurprab
• 0
1
vote
2
replies
222
views
Improving the design matrices vignette in RNAseq123
RNAseq123
4 weeks ago • updated 18 days ago
Lluís Revilla Sancho
▴ 730
16 results • Page
1 of 1
Recent ...
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Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Aha, that is a good one! Starting from release 40, as I just found out, Fedora apparently is not including/using `zlib` as such anymore, b…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
What version of zlib are you running? I can compile with 1.2.7
Comment: SingleR Label.Ont
by
Anna
• 0
It makes me happy that I have finally found a trusted and safe online casino in Australia. I read a lot of different additional information…
Answer: Error when running topGO with KS statistic and elim agorithm
by
James W. MacDonald
66k
You'll probably have to figure this out yourself. That error is coming from a non-exported function called `.sigGroups.elim`, which iterate…
Answer: Cluster columns in Pheatmap
by
James W. MacDonald
66k
This support site is meant for helping people with Bioconductor packages, and `pheatmap` isn't one of them, so you should be posting on bio…
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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