Popular Question

Created A Question With More Than 1,000 Views

Awarded 7402 times (see all awards). Earned by the following contributors:
Bogdan ▴ 670
11 months, 1 week ago
Palo Alto, CA, USA
about baseMean in DEseq2
Bogdan ▴ 670
1 year ago
Palo Alto, CA, USA
performing the differential binding in ChIP-seq
Bogdan ▴ 670
1 year, 4 months ago
Palo Alto, CA, USA
normalization of ChIP-seq data by using the spike-ins or by using total library sizes
Bogdan ▴ 670
1 year, 6 months ago
Palo Alto, CA, USA
scDblFinder and xgboost
Bogdan ▴ 670
1 year, 6 months ago
Palo Alto, CA, USA
installation of BioC packages on Mac M1 Monterrey OS
Bogdan ▴ 670
1 year, 7 months ago
Palo Alto, CA, USA
converting bedgraph into bigwig
Bogdan ▴ 670
1 year, 11 months ago
Palo Alto, CA, USA
reading hdf5 files without hdf5r
Bogdan ▴ 670
2 years, 1 month ago
Palo Alto, CA, USA
Gviz and datatracks
Bogdan ▴ 670
2 years, 5 months ago
Palo Alto, CA, USA
AnnotationDbi
Bogdan ▴ 670
2 years, 5 months ago
Palo Alto, CA, USA
TCL/TK in R
Bogdan ▴ 670
2 years, 8 months ago
Palo Alto, CA, USA
extracting the KEGG pathway for a set of genes
Bogdan ▴ 670
2 years, 9 months ago
Palo Alto, CA, USA
about MapIds function
Bogdan ▴ 670
3 years, 4 months ago
Palo Alto, CA, USA
to extract the mRNA sequences of the canonical RefSeq genes
Bogdan ▴ 670
3 years, 6 months ago
Palo Alto, CA, USA
analysis of FACS data using BioC
Bogdan ▴ 670
4 years, 2 months ago
Palo Alto, CA, USA
normalization methods for scRNA-seq and RNA-seq in specific cases of increased global transcription
Bogdan ▴ 670
4 years, 2 months ago
Palo Alto, CA, USA
analysis of multiple time points * 2 replicates of scRNA-seq
Bogdan ▴ 670
4 years, 8 months ago
Palo Alto, CA, USA
analysis of multiple batches and multiple treatment conditions in scRNA-seq
Bogdan ▴ 670
4 years, 8 months ago
Palo Alto, CA, USA
Error in GenomeInfoDb:::getDanglingSeqlevels
Bogdan ▴ 670
4 years, 8 months ago
Palo Alto, CA, USA
the coordinates of exons of RefSeq or ENSEMBL genes
Bogdan ▴ 670
4 years, 9 months ago
Palo Alto, CA, USA
using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-seq data
Bogdan ▴ 670
4 years, 9 months ago
Palo Alto, CA, USA
correcting the batch effects in Limma and SVA
Bogdan ▴ 670
4 years, 9 months ago
Palo Alto, CA, USA
number of cell clusters in scRNA-seq
Bogdan ▴ 670
4 years, 10 months ago
Palo Alto, CA, USA
differential expression between clusters (in distinct "treatments") in scRNAseq
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
(batch) corrections of RNA-seq data: integrating LIMMA and SVA
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
extracting the genes associated with the clusters
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
edgeR and removeBatchEffect()
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
heatmap of genes based on enriched GO categories
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
about VCF and BAM files
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
about scRNA-seq, SEURAT and CCA
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
about UCSCtrack in Gviz
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
about MAFTOOLS and MAF files
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
heatmap of genes based on enriched GO categories
Bogdan ▴ 670
5 years, 3 months ago
Palo Alto, CA, USA
gene counts in Seurat after RunCCA() and AlignSubspace()
Bogdan ▴ 670
5 years, 4 months ago
Palo Alto, CA, USA
scRNA-seq: a question about the names of the columns in a Seurat object
Bogdan ▴ 670
5 years, 4 months ago
Palo Alto, CA, USA
Fwd: edgeR dispersions
Bogdan ▴ 670
5 years, 6 months ago
Palo Alto, CA, USA
about appending GRANGES
Bogdan ▴ 670
5 years, 6 months ago
Palo Alto, CA, USA
extracting the genes associated with the clusters
Bogdan ▴ 670
5 years, 6 months ago
Palo Alto, CA, USA
gene set enrichment analysis
Bogdan ▴ 670
5 years, 7 months ago
Palo Alto, CA, USA
about collapsed and expanded vcf file
Bogdan ▴ 670
5 years, 7 months ago
Palo Alto, CA, USA
extracting the genes associated with the clusters
Bogdan ▴ 670
5 years, 7 months ago
Palo Alto, CA, USA
about appending GRANGES
Bogdan ▴ 670
5 years, 7 months ago
Palo Alto, CA, USA
Fwd: edgeR dispersions
Bogdan ▴ 670
5 years, 7 months ago
Palo Alto, CA, USA
extracting gene names, gene id and transcript id
Bogdan ▴ 670
5 years, 7 months ago
Palo Alto, CA, USA
the closest gene to a breakpoint
Bogdan ▴ 670
5 years, 9 months ago
Palo Alto, CA, USA
single cell RNA-seq pipeline
Bogdan ▴ 670
5 years, 9 months ago
Palo Alto, CA, USA
an error in BioMart regarding gene annotations
Bogdan ▴ 670
5 years, 9 months ago
Palo Alto, CA, USA
comparing 2 long BED files in R in an efficient way
Bogdan ▴ 670
5 years, 11 months ago
Palo Alto, CA, USA
filtering a VCF file based on genotype
Bogdan ▴ 670
6 years, 4 months ago
Palo Alto, CA, USA
normalization of CHIP-seq samples (ChIP and INPUT)
Bogdan ▴ 670
6 years, 6 months ago
Palo Alto, CA, USA
extracting the exons coordinates on hg38
93 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6