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Created An Answer That Has Been Accepted
Awarded 5048 times (see all awards). Earned by the
following contributors:
4 days, 15 hours ago
United States
Answer: Struggle with the replicates of epic array data
1 week, 2 days ago
WEHI, Melbourne, Australia
Answer: Is it recommended to analyze different tissues together when using edgeR
1 week, 3 days ago
United States
Answer: preprocessIllumina error with EPICv2 array
1 week, 3 days ago
United States
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
1 week, 4 days ago
WEHI, Melbourne, Australia
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
2 weeks, 2 days ago
WEHI, Melbourne, Australia
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
1 month ago
Australia
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
1 month ago
United States
Answer: biomaRt rnorvegicus_gene_ensembl not available anymore
1 month ago
United States
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
1 month, 1 week ago
United States
Answer: clusterProfiler enrichGO on only T-cell related GO terms
1 month, 1 week ago
WEHI, Melbourne, Australia
Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
1 month, 1 week ago
WEHI, Melbourne, Australia
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
1 month, 1 week ago
United States
Answer: DESeq2 - interactions when using factors concatenated into group
1 month, 2 weeks ago
United States
Answer: How to reverse complement some elements of a DNAStringSet
1 month, 2 weeks ago
WEHI, Melbourne, Australia
Answer: How to subset voomLmFit (MArrayLM) object?
1 month, 2 weeks ago
United States
Answer: Are transformed values from rlog /vst log2 normalized counts?
1 month, 3 weeks ago
United States
Answer: How to conduct maSigPro analysis with only one condition?
1 month, 3 weeks ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
1 month, 3 weeks ago
Japan
Answer: Highly DE genes but small count difference within conditions
1 month, 3 weeks ago
United States
Answer: Highly DE genes but small count difference within conditions
1 month, 3 weeks ago
Germany
Answer: How to control batch effect if Group and batch are same?
2 months ago
United States
Answer: ISO a solution to rank-order introns by transcript
2 months ago
United States
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
2 months ago
United States
Answer: Batch adjustment for cohort based RNA seq data
2 months, 3 weeks ago
United States
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
2 months, 3 weeks ago
United States
Answer: Should tSNE from biol. replicates look alike?
3 months ago
United States
Answer: Size factor normalized counts for between sample comparisons - correct?
3 months ago
WEHI, Melbourne, Australia
Answer: voom does not seem to properly correct for library size
3 months, 1 week ago
United States
Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: using limma trend workflow in CAMERA
3 months, 2 weeks ago
United States
Answer: the count matrix have decimal values
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: One-sided tests with CAMERA-PR
3 months, 2 weeks ago
Germany
Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: RUV - Does my data need further normalisation?
3 months, 2 weeks ago
Germany
Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
3 months, 3 weeks ago
United States
Answer: How to Query Only SNPs from the biomaRt Variation Database
3 months, 3 weeks ago
United States
Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
3 months, 4 weeks ago
United States
Answer: How to use specific size factors and average transcript lengths from tximport i
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