Scholar
Created An Answer That Has Been Accepted
Awarded 5089 times (see all awards). Earned by the
following contributors:
10 months, 3 weeks ago
United States
Answer: biomaRt rnorvegicus_gene_ensembl not available anymore
10 months, 3 weeks ago
United States
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
10 months, 4 weeks ago
United States
Answer: Samples used for network inference in RegEnrich
10 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: Analysis of 2*4 factorial design
11 months ago
United States
Answer: clusterProfiler enrichGO on only T-cell related GO terms
11 months ago
WEHI, Melbourne, Australia
Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
11 months ago
WEHI, Melbourne, Australia
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
11 months ago
United States
Answer: DESeq2 - interactions when using factors concatenated into group
11 months, 1 week ago
United States
Answer: How to reverse complement some elements of a DNAStringSet
11 months, 1 week ago
WEHI, Melbourne, Australia
Answer: How to subset voomLmFit (MArrayLM) object?
11 months, 1 week ago
United States
Answer: Are transformed values from rlog /vst log2 normalized counts?
11 months, 2 weeks ago
United States
Answer: How to conduct maSigPro analysis with only one condition?
11 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
11 months, 2 weeks ago
Japan
Answer: Highly DE genes but small count difference within conditions
11 months, 2 weeks ago
United States
Answer: Highly DE genes but small count difference within conditions
11 months, 2 weeks ago
Germany
Answer: How to control batch effect if Group and batch are same?
11 months, 3 weeks ago
United States
Answer: ISO a solution to rank-order introns by transcript
11 months, 3 weeks ago
United States
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
11 months, 4 weeks ago
United States
Answer: Batch adjustment for cohort based RNA seq data
1 year ago
United States
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
1 year ago
United States
Answer: Should tSNE from biol. replicates look alike?
1 year ago
United States
Answer: Size factor normalized counts for between sample comparisons - correct?
1 year ago
WEHI, Melbourne, Australia
Answer: voom does not seem to properly correct for library size
1 year, 1 month ago
United States
Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
1 year, 1 month ago
WEHI, Melbourne, Australia
Answer: using limma trend workflow in CAMERA
1 year, 1 month ago
United States
Answer: the count matrix have decimal values
1 year, 1 month ago
WEHI, Melbourne, Australia
Answer: One-sided tests with CAMERA-PR
1 year, 1 month ago
Germany
Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
1 year, 1 month ago
WEHI, Melbourne, Australia
Answer: RUV - Does my data need further normalisation?
1 year, 1 month ago
Germany
Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
1 year, 1 month ago
United States
Answer: How to Query Only SNPs from the biomaRt Variation Database
1 year, 1 month ago
United States
Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
1 year, 1 month ago
United States
Answer: How to use specific size factors and average transcript lengths from tximport i
1 year, 1 month ago
Ireland
Answer: Deseq2 design formula and analysis with internal controls
1 year, 1 month ago
United States
Answer: A question occur when using DESeq2 on a complex design
1 year, 1 month ago
United States
Answer: Doubt about model in paired samples (intercept ?)
1 year, 2 months ago
United States
Answer: DeSeq2 Model Problems with species, tissue, and tissue status nesting
1 year, 2 months ago
United States
Answer: Parallel comparison of two DNAString objects with IUPAC ambiguities
1 year, 2 months ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
1 year, 2 months ago
United States
Answer: Limma comparing gene expression between base line and one treatment
1 year, 2 months ago
United States
Answer: Limma - 0 downreg and upreg values
1 year, 2 months ago
WEHI, Melbourne, Australia
Answer: LIMMA 2x2 Factorial Design with Paired Samples
1 year, 2 months ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6