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Created An Answer That Has Been Accepted
Awarded 5082 times (see all awards). Earned by the
following contributors:
8 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
8 months, 3 weeks ago
United States
Answer: DESeq2 - interactions when using factors concatenated into group
8 months, 3 weeks ago
United States
Answer: How to reverse complement some elements of a DNAStringSet
8 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: How to subset voomLmFit (MArrayLM) object?
8 months, 4 weeks ago
United States
Answer: Are transformed values from rlog /vst log2 normalized counts?
9 months ago
United States
Answer: How to conduct maSigPro analysis with only one condition?
9 months ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
9 months ago
Japan
Answer: Highly DE genes but small count difference within conditions
9 months ago
United States
Answer: Highly DE genes but small count difference within conditions
9 months, 1 week ago
Germany
Answer: How to control batch effect if Group and batch are same?
9 months, 2 weeks ago
United States
Answer: ISO a solution to rank-order introns by transcript
9 months, 2 weeks ago
United States
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
9 months, 2 weeks ago
United States
Answer: Batch adjustment for cohort based RNA seq data
10 months ago
United States
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
10 months ago
United States
Answer: Should tSNE from biol. replicates look alike?
10 months, 1 week ago
United States
Answer: Size factor normalized counts for between sample comparisons - correct?
10 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: voom does not seem to properly correct for library size
10 months, 3 weeks ago
United States
Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
10 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: using limma trend workflow in CAMERA
10 months, 3 weeks ago
United States
Answer: the count matrix have decimal values
10 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: One-sided tests with CAMERA-PR
10 months, 4 weeks ago
Germany
Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
11 months ago
WEHI, Melbourne, Australia
Answer: RUV - Does my data need further normalisation?
11 months ago
Germany
Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
11 months ago
United States
Answer: How to Query Only SNPs from the biomaRt Variation Database
11 months ago
United States
Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
11 months, 1 week ago
United States
Answer: How to use specific size factors and average transcript lengths from tximport i
11 months, 1 week ago
Ireland
Answer: Deseq2 design formula and analysis with internal controls
11 months, 2 weeks ago
United States
Answer: A question occur when using DESeq2 on a complex design
11 months, 3 weeks ago
United States
Answer: Doubt about model in paired samples (intercept ?)
11 months, 3 weeks ago
United States
Answer: DeSeq2 Model Problems with species, tissue, and tissue status nesting
11 months, 3 weeks ago
United States
Answer: Parallel comparison of two DNAString objects with IUPAC ambiguities
11 months, 3 weeks ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
11 months, 3 weeks ago
United States
Answer: Limma comparing gene expression between base line and one treatment
11 months, 3 weeks ago
United States
Answer: Limma - 0 downreg and upreg values
11 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: LIMMA 2x2 Factorial Design with Paired Samples
11 months, 3 weeks ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
12 months ago
Germany
Answer: Inconsistent nullp and goseq enrichment results across operating systems
1 year ago
WEHI, Melbourne, Australia
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
1 year ago
WEHI, Melbourne, Australia
Answer: Warning message when running limma with covariates
1 year ago
United States
Answer: Test of Multiple Linear Combination on coefficients from Wald Test in Deseq2
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