Scholar
Created An Answer That Has Been Accepted
Awarded 5048 times (see all awards). Earned by the
following contributors:
4 months ago
Ireland
Answer: Deseq2 design formula and analysis with internal controls
4 months, 1 week ago
United States
Answer: A question occur when using DESeq2 on a complex design
4 months, 1 week ago
United States
Answer: Doubt about model in paired samples (intercept ?)
4 months, 1 week ago
United States
Answer: DeSeq2 Model Problems with species, tissue, and tissue status nesting
4 months, 1 week ago
United States
Answer: Parallel comparison of two DNAString objects with IUPAC ambiguities
4 months, 2 weeks ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
4 months, 2 weeks ago
United States
Answer: Limma comparing gene expression between base line and one treatment
4 months, 2 weeks ago
United States
Answer: Limma - 0 downreg and upreg values
4 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: LIMMA 2x2 Factorial Design with Paired Samples
4 months, 2 weeks ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
4 months, 3 weeks ago
Germany
Answer: Inconsistent nullp and goseq enrichment results across operating systems
4 months, 3 weeks ago
United States
Answer: Mapping Between GenBank ID's and Uniprot
5 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
5 months, 1 week ago
United States
Answer: Test of Multiple Linear Combination on coefficients from Wald Test in Deseq2
5 months, 2 weeks ago
United States
Answer: Create multiple DoparParams with different number of registered cores
5 months, 2 weeks ago
United States
Answer: DESeq2 returns results for group with just one replicate
5 months, 2 weeks ago
Australia
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
5 months, 3 weeks ago
Australia
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
5 months, 3 weeks ago
United States
Answer: Double normalising when using sva and deseq2
5 months, 3 weeks ago
Barcelona/Universitat Pompeu Fabra
Answer: Interpretation of GSVA with absRanking=TRUE
6 months ago
United States
Answer: LRT, pairwise comparisons and p-value adjustment
6 months, 1 week ago
United States
Answer: Slightly different count plots from R and spreadsheet
6 months, 2 weeks ago
USA, Los Angeles, USC
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
6 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: How to correctly adjust for gender in edgeR
6 months, 3 weeks ago
Barcelona/Universitat Pompeu Fabra
Answer: Method to find pathways different between 2 groups
7 months ago
St Louis, MO
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
7 months, 1 week ago
United States
Answer: Math expression in shapeCustom legend in EnhancedVolcano
7 months, 1 week ago
United States
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
7 months, 1 week ago
United States
Answer: How to retrieve gene ontology GO class from gene list?
7 months, 1 week ago
United States
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
7 months, 1 week ago
United States
Answer: DESeq2 - dispersion estimation when there is none
7 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Why p value inconsistent when using different number of pathway score?
7 months, 1 week ago
Germany
Answer: Why p value inconsistent when using different number of pathway score?
7 months, 2 weeks ago
EMBL Heidelberg
Answer: Error retrieving ensembl gene id using biomaRt...
7 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: FilterByExpr low counts with small sample size
7 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Reading huge bismark coverage files using bbseq::read.bismark
7 months, 3 weeks ago
Switzerland
Answer: ComplexHeatmap: change the names of a HeatmapAnnotation object
7 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Light difference when using coef vs omit a group when compare 3 groups.
7 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Memory errors using read.bismark?
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