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Created An Answer That Has Been Accepted
Awarded 4941 times (see all awards). Earned by the
following contributors:
2 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
2 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Monotonic genes in results of differential gene expression analysis
2 months, 4 weeks ago
United States
Answer: Merging of Human and Mouse SingleCellExperiment Objects Error
2 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: EdgeR: Should I include all samples/conditions in my dispersion estimation while
3 months ago
United States
Answer: How to interpret log2fold values when using numeric contrasts in DESEQ2?
4 months ago
United States
Answer: Reduce single cell experiment size to use as reference for annotation with Singl
4 months ago
WEHI, Melbourne, Australia
Answer: removeBatchEffect with non-linear model fit
4 months, 1 week ago
United States
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
4 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Correct the batch effect in methylation analysis in R
4 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Filter genes by expression for voomLmFit
4 months, 2 weeks ago
United States
Answer: limma::voom vs edgeR::voomLmFit - when to use?
4 months, 3 weeks ago
Seattle, WA, United States
Answer: DataFrame Printing User Control
4 months, 3 weeks ago
EMBL Heidelberg
Answer: biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl
4 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Is it appropriate to apply linear mixed models to Voom transformed data?
4 months, 3 weeks ago
United States
Answer: STRINGdb R package reference class instantiation with v12.0
4 months, 3 weeks ago
United States
Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
5 months ago
WEHI, Melbourne, Australia
Answer: limma + voom combine voomWithQualityWeights and duplicateCorrelation
5 months ago
Germany
Answer: trying to add SingleR label to Seurat Object fails
5 months, 1 week ago
United States
Answer: DESeq2 unable to handle large count values
5 months, 1 week ago
Cambridge UK
Answer: read10xCounts for Cell Ranger 7 Output
5 months, 2 weeks ago
Seattle, WA, United States
Answer: Error in Gviz (actually, rtracklayer) | IdeogramTrack
5 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: DecideTest vs topTAGs in edgeR
5 months, 3 weeks ago
United States
Answer: Need help generating BSgenome and orgdb
5 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: [Bug] Segfault in edgeR::cpm
6 months ago
United States
Answer: Annotation Dbi Error: unable to find an inherited method for function 'x' for si
6 months, 1 week ago
WEHI, Melbourne, Australia
Answer: limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsist
6 months, 1 week ago
United States
Answer: SeqSQC R library, functions PCA and IBD not working
6 months, 1 week ago
WEHI, Melbourne, Australia
Answer: limma: More differentially expressed genes when factor included in model than wh
6 months, 1 week ago
Cambridge, UK
Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
6 months, 2 weeks ago
United States
Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
6 months, 3 weeks ago
Germany
Answer: ComBat_seq function in sva package does not return a matrix
6 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Batch correction and repeated measures
6 months, 3 weeks ago
United States
Answer: Remove duplicates of colData in TreeSummarizedExperiment
6 months, 3 weeks ago
Seattle, WA, United States
Answer: DataFrame Construction With Non-standard Column
7 months ago
WEHI, Melbourne, Australia
Answer: EdgeR and DESeq2, variance estimation and parametric test
7 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Phenotype effect - building a contrast matrix - grouping vs interaction
7 months, 1 week ago
Wageningen University, Wageningen, the …
Answer: Cluster profiler emap plot - what are the annotations?
7 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Import Salmon data with tximport and pool technical replicates
7 months, 3 weeks ago
United States
Answer: Import Salmon data with tximport and pool technical replicates
7 months, 4 weeks ago
Wageningen University, Wageningen, the …
Answer: Broken UNITE 9.0 link (General FASTA Release)
8 months, 1 week ago
WEHI, Melbourne, Australia
Answer: removing the batch effect for vst counts and defining the batches in removeBatch
8 months, 1 week ago
Germany
Answer: Zero counts for all samples for all genes downloaded from recount3
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