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Created An Answer That Has Been Accepted
Awarded 5089 times (see all awards). Earned by the
following contributors:
1 week, 3 days ago
WEHI, Melbourne, Australia
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
1 month, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
1 month, 3 weeks ago
United States
Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
1 month, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Limma : paired samples leading to unexpected estimates
2 months ago
WEHI, Melbourne, Australia
Answer: Transcript expression analysis using EdgeR
3 months, 2 weeks ago
United States
Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
3 months, 2 weeks ago
Germany
Answer: Deseq2 paired sample in the design is considered as "batch"?
3 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: limma duplicateCorrelation appropriate where some blocks cross condition and som
4 months ago
United States
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
4 months, 1 week ago
Seattle, WA, United States
Answer: GAlignments Cigar to GRanges
4 months, 1 week ago
United States
Answer: AnnotationHub/ExperimentHub resources backup
4 months, 1 week ago
United States
Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
5 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: how to use `arrayWeightsQuick()`?
5 months, 2 weeks ago
Germany
Answer: Origin of the labels for the SingleCellMultiModal dataset
6 months, 1 week ago
United States
Answer: Using TPM from tximport of Salmon output for singscore
6 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
6 months, 2 weeks ago
United States
Answer: Limma - Complex 2-way multi-level contrast with paired samples
6 months, 2 weeks ago
United States
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
6 months, 2 weeks ago
United States
Answer: Surprising behavior for DEXseq dispersion estimate plot?
6 months, 3 weeks ago
United States
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
7 months, 1 week ago
The city by the bay
Answer: SingleR with multiple single cell references
7 months, 2 weeks ago
United States
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
7 months, 3 weeks ago
United States
Answer: Find exact GRanges match keeping metadata columns
7 months, 3 weeks ago
Barcelona, Spain
Answer: Unused arguments error without used arguments in GSVA?
7 months, 4 weeks ago
The city by the bay
Answer: Csaw normalization strategies - general inquiry
8 months, 1 week ago
United States
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
8 months, 3 weeks ago
United States
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
9 months, 1 week ago
Germany
Answer: Standardization of rlog transformed counts before PCA
9 months, 1 week ago
United States
Answer: Standardization of rlog transformed counts before PCA
9 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: RSubread output significantly different from bash Subread output
9 months, 2 weeks ago
The city by the bay
Answer: Running multiple KNN queries in parallel
9 months, 2 weeks ago
Germany
Answer: RSubread output significantly different from bash Subread output
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Crossover design with limma
9 months, 4 weeks ago
United States
Answer: bioconductor packages on bioconda
10 months ago
United States
Answer: Struggle with the replicates of epic array data
10 months ago
WEHI, Melbourne, Australia
Answer: Is it recommended to analyze different tissues together when using edgeR
10 months ago
United States
Answer: preprocessIllumina error with EPICv2 array
10 months ago
United States
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
10 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
10 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
10 months, 3 weeks ago
Australia
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
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