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Created An Answer That Has Been Accepted
Awarded 5081 times (see all awards). Earned by the
following contributors:
1 year, 4 months ago
WEHI, Melbourne, Australia
Answer: Constrast for Time Course Experiments using Limma
1 year, 4 months ago
United Kingdom
Answer: Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
1 year, 4 months ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
1 year, 4 months ago
United States
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
1 year, 4 months ago
United States
Answer: evaluate the variable importance on genes
1 year, 4 months ago
United States
Answer: RLE plots before and after RUVg correction are the same
1 year, 4 months ago
WEHI, Melbourne, Australia
Answer: Confusion about LFC using contrasts weights in EdgeR
1 year, 4 months ago
WEHI, Melbourne, Australia
Answer: Normalization factors when there is a possible unidirectional expression
1 year, 4 months ago
WEHI, Melbourne, Australia
Answer: How does one test for interactions in EdgeR?
1 year, 4 months ago
Denver, University of Colorado Anschutz…
Answer: seqlevelsStyle() not working
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Design matrix after RUVg correction
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Longitudinal analysis in Limma
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: How to get normalized values for methylation counts in edgeR
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: voom with quality weights after RUV correction
1 year, 5 months ago
United States
Answer: TMM normalization after RUVg correction
1 year, 5 months ago
EMBL Heidelberg
Answer: create COMPOUND dataset (2 matrices) with rhdf5?
1 year, 5 months ago
United States
Answer: Continuous variable to identify responder genes using DESeq2
1 year, 5 months ago
United States
Answer: Need Help w/ Subset on GRangesList
1 year, 5 months ago
United States
Answer: Transcript level expression for CCLE
1 year, 5 months ago
Australia/Melbourne
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Using limma for controlling age variable
1 year, 5 months ago
United States
Answer: DESeq2 analysis on time-series RNA experiment
1 year, 5 months ago
United States
Answer: Question about correction of confounders for EWAS
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: Monotonic genes in results of differential gene expression analysis
1 year, 5 months ago
United States
Answer: Merging of Human and Mouse SingleCellExperiment Objects Error
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: EdgeR: Should I include all samples/conditions in my dispersion estimation while
1 year, 5 months ago
United States
Answer: How to interpret log2fold values when using numeric contrasts in DESEQ2?
1 year, 5 months ago
WEHI, Melbourne, Australia
Answer: filtering lowly expressed reads
1 year, 6 months ago
United States
Answer: Txdb object for UCSC hs1 (T2T-CHM13)
1 year, 6 months ago
United States
Answer: Reduce single cell experiment size to use as reference for annotation with Singl
1 year, 6 months ago
WEHI, Melbourne, Australia
Answer: removeBatchEffect with non-linear model fit
1 year, 6 months ago
United States
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
1 year, 6 months ago
WEHI, Melbourne, Australia
Answer: Correct the batch effect in methylation analysis in R
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Filter genes by expression for voomLmFit
1 year, 7 months ago
United States
Answer: limma::voom vs edgeR::voomLmFit - when to use?
1 year, 7 months ago
Seattle, WA, United States
Answer: DataFrame Printing User Control
1 year, 7 months ago
EMBL Heidelberg
Answer: biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl
1 year, 7 months ago
WEHI, Melbourne, Australia
Answer: Is it appropriate to apply linear mixed models to Voom transformed data?
1 year, 7 months ago
United States
Answer: STRINGdb R package reference class instantiation with v12.0
1 year, 7 months ago
United States
Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
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