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Created An Answer That Has Been Accepted
Awarded 5048 times (see all awards). Earned by the
following contributors:
7 months, 3 weeks ago
Cambridge, UK
Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
7 months, 3 weeks ago
United States
Answer: Not fully paired differential gene expression analysis
7 months, 4 weeks ago
The city by the bay
Answer: Bluster and Varieties of Louvain Clulstering
8 months ago
WEHI, Melbourne, Australia
Answer: limma models out of memory issue on Slurm HPC
8 months ago
United States
Answer: DESeq2 , filter and theta arguments in resutlts()
8 months ago
WEHI, Melbourne, Australia
Answer: Differing results from plotMDS and PCAtools
8 months ago
WEHI, Melbourne, Australia
Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
8 months, 1 week ago
Seattle, WA, United States
Answer: From a DNAStringSet to a data.frame
8 months, 1 week ago
Germany
Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
8 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
8 months, 2 weeks ago
United States
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
8 months, 2 weeks ago
United States
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
8 months, 2 weeks ago
United States
Answer: With DESeq2 "Not full rank" Error with design
8 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
8 months, 3 weeks ago
Seattle, WA, United States
Answer: Biostrings: read*StringSet() functions leave open file handles
8 months, 3 weeks ago
Germany
Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
8 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: Constrast for Time Course Experiments using Limma
8 months, 4 weeks ago
United Kingdom
Answer: Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
9 months ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
9 months ago
United States
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
9 months, 1 week ago
United States
Answer: evaluate the variable importance on genes
9 months, 1 week ago
United States
Answer: RLE plots before and after RUVg correction are the same
9 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Confusion about LFC using contrasts weights in EdgeR
9 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Normalization factors when there is a possible unidirectional expression
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: How does one test for interactions in EdgeR?
9 months, 3 weeks ago
Denver, University of Colorado Anschutz…
Answer: seqlevelsStyle() not working
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Design matrix after RUVg correction
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Longitudinal analysis in Limma
9 months, 3 weeks ago
United States
Answer: ComplexHeatmap crashing R session
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: How to get normalized values for methylation counts in edgeR
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
9 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: voom with quality weights after RUV correction
9 months, 4 weeks ago
United States
Answer: TMM normalization after RUVg correction
9 months, 4 weeks ago
EMBL Heidelberg
Answer: create COMPOUND dataset (2 matrices) with rhdf5?
10 months ago
United States
Answer: Continuous variable to identify responder genes using DESeq2
10 months ago
United States
Answer: Transcript level expression for CCLE
10 months ago
Australia/Melbourne/Olivia Newton-John …
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
10 months ago
WEHI, Melbourne, Australia
Answer: Using limma for controlling age variable
10 months ago
United States
Answer: Question about correction of confounders for EWAS
10 months, 1 week ago
WEHI, Melbourne, Australia
Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
10 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Monotonic genes in results of differential gene expression analysis
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