Teacher
Created An Answer With At Least 3 Up-Votes
Awarded 2247 times (see all awards). Earned by the
following contributors:
1 month, 3 weeks ago
WEHI, Melbourne, Australia
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
1 month, 4 weeks ago
Germany
Answer: How to control batch effect if Group and batch are same?
3 months, 1 week ago
United States
Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
4 months ago
Ireland
Answer: Deseq2 design formula and analysis with internal controls
4 months, 2 weeks ago
United States
Answer: Parallel comparison of two DNAString objects with IUPAC ambiguities
4 months, 2 weeks ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
4 months, 2 weeks ago
United States
Answer: Limma comparing gene expression between base line and one treatment
4 months, 2 weeks ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
5 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
5 months, 3 weeks ago
Australia
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
6 months, 4 weeks ago
United States
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
7 months ago
WEHI, Melbourne, Australia
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
8 months, 2 weeks ago
United States
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
9 months ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: How does one test for interactions in EdgeR?
9 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Design matrix after RUVg correction
10 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Monotonic genes in results of differential gene expression analysis
10 months, 2 weeks ago
United States
Answer: Enrichement with clusterProfiler and biomart
11 months, 3 weeks ago
United States
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
1 year ago
United States
Answer: Conversion between different types of bioinformatic forms. (eg. NCBI protein to
1 year, 1 month ago
EMBL Heidelberg
Answer: biomaRt not working - lazy table error
1 year, 1 month ago
WEHI, Melbourne, Australia
Answer: DecideTest vs topTAGs in edgeR
1 year, 2 months ago
Germany
Answer: ComBat_seq function in sva package does not return a matrix
1 year, 2 months ago
WEHI, Melbourne, Australia
Answer: Batch correction and repeated measures
1 year, 2 months ago
Seattle, WA, United States
Answer: DataFrame Construction With Non-standard Column
1 year, 2 months ago
WEHI, Melbourne, Australia
Answer: Phenotype effect - building a contrast matrix - grouping vs interaction
1 year, 3 months ago
United States
Answer: error message when I use the bsseq read.bismark command to read a genome wide cy
1 year, 4 months ago
WEHI, Melbourne, Australia
Answer: ASpli checks fail on Linux due to missing dependency to statmod
1 year, 4 months ago
EMBL Heidelberg
Answer: How to access the C++ code of the function .cxx_ave_log_cpm in the aveLogCPM.def
1 year, 4 months ago
United States
Answer: Proper way to implement DESeq2 when comparing samples with trisomies?
1 year, 6 months ago
United States
Answer: Applying DESeq2 to (suspected) Poisson distributed gene expression data (in the
1 year, 7 months ago
Seattle, WA, United States
Answer: S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconduct
1 year, 8 months ago
Germany
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
1 year, 8 months ago
United States
Answer: minfi support of illumina Infinium methylationEPIC v2.0
1 year, 9 months ago
Guangzhou
Answer: gseKEGG - no gene can be mapped (RNAseq analysis)
1 year, 9 months ago
United States
Answer: how to extract and match information of two filein R
1 year, 10 months ago
United States
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
1 year, 10 months ago
United States
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6