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following contributors:
2 years, 4 months ago
Seattle, WA, United States
Answer: S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconduct
2 years, 5 months ago
Germany
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
2 years, 6 months ago
United States
Answer: minfi support of illumina Infinium methylationEPIC v2.0
2 years, 6 months ago
Guangzhou
Answer: gseKEGG - no gene can be mapped (RNAseq analysis)
2 years, 6 months ago
United States
Answer: how to extract and match information of two filein R
2 years, 7 months ago
United States
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
2 years, 7 months ago
United States
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
2 years, 8 months ago
United States
Answer: Flank GenomicRanges on Both Sides
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: How to identify top most variable genes from log2 normalized data?
2 years, 9 months ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
2 years, 9 months ago
St Louis, MO
Answer: Implementation of the "original" GSEA algorithm in R
2 years, 10 months ago
United States
Answer: Too many differentially expressed miRNA with limma
2 years, 11 months ago
United States
Answer: Problem obtaining NCBI gene IDs from Ensembl version 107
2 years, 11 months ago
Heidelberg
Answer: Is there any description available for KEGG Pathway Edge Types
2 years, 11 months ago
United States
Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
3 years, 1 month ago
United States
Answer: Convert an R data.frame to a bed file in R
3 years, 1 month ago
Australia/Melbourne
Answer: cellCounts() function floating point error
3 years, 1 month ago
France
Answer: DESeq2 is renaming gene names and lack of downregulated genes
3 years, 2 months ago
United States
Answer: Confused about the CPM and TMM normalization in edgeR
3 years, 3 months ago
United States
Answer: Large difference between lfcshrink and non-shrunk DESeq2 results
3 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Pseudo-bulk Limma Approaches
3 years, 3 months ago
United States
Answer: how to color specific node or gene symbol from cnetplot ?
3 years, 5 months ago
United States
Answer: Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .
3 years, 5 months ago
India
Answer: GDCprepare() can never complete request ("Error: cannot allocate vector")
3 years, 5 months ago
United States
Answer: confused with tximport counts abundance using salmon input
3 years, 5 months ago
Miami, US
Answer: GDCprepare of RNAseq counts produces error
3 years, 6 months ago
WEHI, Melbourne, Australia
Answer: GSEA many significant gene sets despite no differentially expressed genes
3 years, 6 months ago
United States
Answer: Why does BSgenome contain more chromosomes of human and mouse species then they
3 years, 6 months ago
United States
Answer: GO term gene ontology enrichment analysis
3 years, 7 months ago
United States
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
3 years, 7 months ago
United States
Answer: Updating org.Sc.sgd.db, and integration with topGO
3 years, 7 months ago
United States
Answer: Limma/voom analysis of time-series data (with only 1 condition)
3 years, 8 months ago
United States
Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i
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