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Created An Answer With At Least 3 Up-Votes
Awarded 2264 times (see all awards). Earned by the
following contributors:
7 years, 1 month ago
United States
A: maintainer option for bioconductor packages
7 years, 1 month ago
United States
A: Method to get normalized counts in edgeR without cpm
7 years, 1 month ago
United States/Austin Area
A: Pigengene : BN network using consensus module
7 years, 1 month ago
Ghent University, Belgium
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
7 years, 1 month ago
United States
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
7 years, 1 month ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
7 years, 1 month ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
7 years, 1 month ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
7 years, 1 month ago
United States
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
7 years, 1 month ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
7 years, 1 month ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 1 month ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 1 month ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
7 years, 1 month ago
The city by the bay
edgeR normalisation factors different between experimental groups
7 years, 1 month ago
United States
Where to download expected counts instead of normalized RSEM for TCGA LUAD?
7 years, 1 month ago
The city by the bay
A: limma-voom duplicateCorrelation once or twice, difference?
7 years, 1 month ago
WEHI, Melbourne, Australia
A: DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle
7 years, 1 month ago
EMBL Heidelberg
A: BioParallel::BatchtoolsParam() - how to pass customized resource variables to ba
7 years, 2 months ago
United States
A: How to set up appropriate analysis using sample type and condition for DESeq2
7 years, 2 months ago
The city by the bay
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
7 years, 2 months ago
The city by the bay
A: How to calculate average log2 CPM with batch effect?
7 years, 2 months ago
United States
A: Interpreting the results from lfcShrink() with apeglm in DESeq2
7 years, 2 months ago
EMBL Heidelberg
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
7 years, 2 months ago
EMBL Heidelberg
BioParallel::BatchtoolsParam() - how to pass customized resource variables to batchtool's "slurm-simple" template using BatchtoolsParam()?
7 years, 2 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
7 years, 2 months ago
United States
How does DESeq2 handle zero counts in one condition?
7 years, 2 months ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
7 years, 2 months ago
Cambridge, UK
Differential analysis of multiple samples with different time points
7 years, 2 months ago
WEHI, Melbourne, Australia
A: nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
7 years, 2 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
7 years, 2 months ago
United States
trying to annotate overlaps with external file information
7 years, 2 months ago
United States
A: Design and Contrast Matrix for Linear Model. To Combine or not to Combine?
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