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7 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
Voom transformation from counts and normalization to negative values
7 years, 2 months ago
United States
A: ChIPseeker/Question about ''annoatePeak' function and for Bioconductor Annotatio
7 years, 2 months ago
University of Padova
RUVseq PCA on raw data, whereas DESeq suggests stabilization
7 years, 3 months ago
Switzerland
Create custom IdeogramTrack (Gviz)
7 years, 3 months ago
Austria
[xps] Problems building scheme for DroGene 1.1 ST arrays in xps
7 years, 3 months ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
7 years, 3 months ago
Seattle, WA, United States
Calling coverage on GRanges object yields small negative values
7 years, 3 months ago
WEHI, Melbourne, Australia
A: Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
7 years, 3 months ago
Canada
A: Meta-analysis of microarrays (and RNA-seq) data
7 years, 3 months ago
United States
A: EdgeR blocking and "All combinations of multiple factors"
7 years, 3 months ago
United States
A: difference between pd.hugene.2.1.st and hugene21sttranscriptcluster.db
7 years, 3 months ago
The city by the bay
A: limma Multi-level Experiments correcting for continuous covariates
7 years, 3 months ago
United States
A: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
7 years, 3 months ago
The city by the bay
A: Limma example where one comparison gives different results depending on the matr
7 years, 3 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 3 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
7 years, 3 months ago
WEHI, Melbourne, Australia
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
7 years, 3 months ago
WEHI, Melbourne, Australia
A: How to combine multiple probes representing a single gene?
7 years, 3 months ago
United States
How does DESeq2 handle zero counts in one condition?
7 years, 3 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 3 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 3 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
7 years, 3 months ago
The city by the bay
A: Creating a correct limma model with respect to contrast matrix and design matrix
7 years, 3 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
7 years, 3 months ago
United States
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
7 years, 3 months ago
United States
EdgeR blocking and "All combinations of multiple factors"
7 years, 3 months ago
United States
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
7 years, 3 months ago
United States
novice: building gene co-expression network using RNA-Seq data
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
Voom transformation from counts and normalization to negative values
7 years, 3 months ago
United States
A: DE genes comparison of different treatments from microarray and RNAseq data
7 years, 4 months ago
United States
Comparing means of VST tranformed RNA-Seq counts in different groups of samples with boxplots
7 years, 4 months ago
WEHI, Melbourne, Australia
A: Anova; can I use lmFit and eBayes from Limma, or should it be aov?
7 years, 4 months ago
The city by the bay
A: Can limma/other DE algorithms be used for differential analysis of chemical desc
7 years, 4 months ago
United States
A: Gene-GO-term relationship discrepancy between org.Hs.eg.db and geneontology.org
7 years, 4 months ago
United States
Querying specific TCGA datasets through the MultiAssayExperiment R package
7 years, 4 months ago
United States
A: numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
7 years, 4 months ago
United States
A: Where to download expected counts instead of normalized RSEM for TCGA LUAD?
7 years, 4 months ago
China/Guangzhou/Southern Medical Univer…
How to do simple Fisher' exact test for overlapped genomic interval in R?
7 years, 4 months ago
United States
A: How to export enrichGO results for future visualization with barplot, dotplot, e
7 years, 4 months ago
United States
Where to download expected counts instead of normalized RSEM for TCGA LUAD?
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