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Created An Answer With At Least 3 Up-Votes
Awarded 2262 times (see all awards). Earned by the
following contributors:
7 years, 11 months ago
United States
A: Normalize to additional variable (brain weight) in DESeq2
7 years, 11 months ago
WEHI, Melbourne, Australia
A: Can I meaningfully interpret a PCA or MDS plot of data with surrogate variable e
7 years, 11 months ago
The city by the bay
A: edgeR effects of design on testing main effects and interactions
7 years, 11 months ago
United States
A: Difference between heatmap using Euclidian distance and Poisson distance
7 years, 11 months ago
United States
A: DESeq2 contrast give different results for same comparison using standard analys
7 years, 11 months ago
The city by the bay
A: edgeR long vectors support when normalizing abundance matrix
7 years, 11 months ago
United States
A: DESeq2 time series contrasts between timepoints
7 years, 11 months ago
The city by the bay
A: Differential gene expression for multi-factorial experiment using edgeR
7 years, 11 months ago
WEHI, Melbourne, Australia
A: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7 years, 11 months ago
Seattle, WA, United States
C: How to create tx2gene data.frame when there's no TxDb object for the organism yo
7 years, 11 months ago
Seattle, WA, United States
A: Split Genome into 2kb bins GenomicRanges
7 years, 12 months ago
WEHI, Melbourne, Australia
A: limma-trend with random effects and/or array weights
7 years, 12 months ago
Cambridge, UK
A: How to select summit size for histone ChiP-Seq in Diffbind
7 years, 12 months ago
Seattle, WA, United States
A: remove NA's from a DelayedArray
8 years ago
WEHI, Melbourne, Australia
A: remove microarray batch effects using Limma
8 years ago
Icahn School of Medicine at Mount Sinai…
A: removeBatchEffect options: design and covariates
8 years ago
CUNY Graduate School of Public Health a…
A: Reproducibility of MultiDataSet Comparison
8 years ago
CUNY Graduate School of Public Health a…
A: Reproducibility of MultiDataSet Comparison
8 years ago
University of Connecticut
A: SNP location annotation problem in "VariantAnnotation" package
8 years ago
WEHI, Melbourne, Australia
A: Examples of concise description of NGS and bioinformatics (with DESEq2 or edgeR)
8 years ago
Australia/Melbourne
A: nthreads option does NOT work in rsubread featureCounts
8 years, 1 month ago
WEHI, Melbourne, Australia
A: Filtering step in Differential analysis with RSEM values
8 years, 1 month ago
Canada
A: conumee error: query intensities not given for all probes.
8 years, 1 month ago
United States
A: DESeq2 interaction term in two-factor design, which contrasts?
8 years, 1 month ago
United Kingdom
A: Identify up and down regulated genes in affymetrix data
8 years, 1 month ago
United States
A: Identify up and down regulated genes in affymetrix data
8 years, 1 month ago
The city by the bay
A: Designing a model matrix and further process?
8 years, 1 month ago
United Kingdom
Identify up and down regulated genes in affymetrix data
8 years, 2 months ago
The city by the bay
A: Cell type specific cell markers for Seurat based analysis.
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