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Created An Answer With At Least 3 Up-Votes
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following contributors:
10 years, 8 months ago
The city by the bay
A: Possible implementation of roast/mroast for testing common DE patterns across tw
10 years, 8 months ago
United States
DESEq2 comparison with mulitple cell types under 2 conditions
10 years, 8 months ago
WEHI, Melbourne, Australia
A: using duplicateCorrelation with limma+voom for RNA-seq data
10 years, 8 months ago
WEHI, Melbourne, Australia
A: vooma lm.fit versus voom lmFit
10 years, 8 months ago
United States
A: DESEq2 comparison with mulitple cell types under 2 conditions
10 years, 8 months ago
Australia
GOSEQ: could not find any categories for many genes
10 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
A: Ribosome profiling analysis in DEseq2/limma
10 years, 8 months ago
United States
Extracting first member of each element of a matrix of lists
10 years, 8 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 8 months ago
Cambridge, UK
A: Exporting dba.count result as a data frame
10 years, 8 months ago
United States
[DESeq2] time series strain-specific differences over time
10 years, 9 months ago
United States
[DESeq2] time series strain-specific differences over time
10 years, 9 months ago
United States
A: Normalization of RNA-seq data, called remove unwanted variation (RUV), in DESeq2
10 years, 9 months ago
United States
A: discrepance in DESeq2 results with different design structures
10 years, 9 months ago
United States
[DESeq2] time series strain-specific differences over time
10 years, 9 months ago
United States
A: Mapping KEGG pathway names to IDs using KEGG.db package
10 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
A: Low percentage of assigned fragments with FeatureCounts
10 years, 9 months ago
Seattle, WA, United States
A: Calling coverage on GRanges object yields small negative values
10 years, 9 months ago
WEHI, Melbourne, Australia
A: Gene expression between two copies of same gene:use counts or RPKM or FPKM?
10 years, 9 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
10 years, 9 months ago
Cambridge, UK
A: Diffbind dba.analyze Error in d$span : $ operator is invalid for atomic vectors
10 years, 10 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 10 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
10 years, 10 months ago
United States
Using edgeR on pre-post treatment control design
10 years, 10 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
10 years, 10 months ago
United States
A: [DESEQ2] How to access the normalized data of a DESeqDataSet
10 years, 10 months ago
EMBL Heidelberg
Intergenic coordinates with Genomic Feaures
10 years, 10 months ago
United States
Can I feed TCGA normalized count data to EdgeR for differential gene expression analysis
10 years, 10 months ago
United States
A: Can I feed TCGA normalized count data to EdgeR for differential gene expression
10 years, 10 months ago
The city by the bay
A: Appropriate use of the function treat of the limma package
10 years, 10 months ago
European Union
Reactome pathways in ReactomeDB/graphite
10 years, 10 months ago
United States
Use R/Bioconductor to match BLAST hits to GO terms?
10 years, 10 months ago
United States
A: How to specify 'contrast' in glmLRT command when treatments in design matrix are
10 years, 10 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10 years, 10 months ago
The city by the bay
A: Queries regarding normalization methods for RNA sequencing data analysis
10 years, 10 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
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